RNA id: TU2641113


Basic Information

Item Value
RNA id TU2641113
length 2758
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110489408
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 23300570 ~ 23469848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACAGGAATGGAGGTGCAGAGAAGCTGTTCACATTAGAGTCCAATGTGAGCTGTCACTGACGTTGGTCACTTGCCAGTgtgctaagtgtgtgtgtggtgtgtccttCTCTACAGATGGTAAACTGAAGACATGGGTCTACGGTGTGGCAGCTGGAGCTTTTGTTCTACTCGTCTTTATAGTCTCCATGACCTTCCTAGCCTGTAAAAAGCCAAAGAAACCCCAGAGGAGACAGATGTATAACAACCGGCTCAAGCCCCTGACCCTGGCCTATGACGGAGACGCTGACATGTGAACCTCCTAATCTACCTGTGGCAGAATAATTTTACACTGACGTCATGAAGACTGTCGTCGTGGGATCAGACAGATTGGTTGTCATGGAGACCCACCTTTGACGGTTCTTCTCAGGCTACCAGTGGGCGTGGCTTAAAATATCTGGAACTCTGGGAAGACTTACATTATGTCACTGATTTatcaataacaaaaaaaaaatgaaagtcAGACAGAAATCGAACCATGTTTGTTCATTAGTAGCCTAGAATTTTCCTCcctcaatattttttatttatttaatttttgtaTAATTTGTTTCACAAGAGCCTTCACAAACTCTATCTTCTTCTTAAGGAAGTCTGCCTTTGCTTATTTGCCATTCAGTACTTTTTCTGTCAAATAAAAACGCCTTTTGAAACAAAGGTTGTTGGAGAGGGCCCTGAAAAAACACAATGATTTTTGCTGCAAATGCATAAGTCCCTCCTTTGCTACAGGTGCtctgttgaaaatgaaatgagaaATACTCAATGCTTTTTTTTACTTTTCCTGGAGAAAATTGCTGCCTCTATTTTTGTTCTGGACTGGATCCTTTTCCctaaaaaataaaacaagaaGAAAGTGTCCTAATCTTGCAGAAATGCTGTCAACCTTTGTAGGAaatctctttctgcctctccttttctcctccgtTTTCAGGCGCAATATTGCACTATATTAGTGCAGCATGATATGTACTTATGTCTAGGAAGCTGCCTCTCTCAATACAAGATGATGTACAGTCTTGTGCTAGAAATGTCAAAAAGTAGactttttttcaaaaacaaaaacTCACCAACATTTGTTAAGAATATTTTGCTTATTTTGCTTCTTGTATGTGATATGATGGATGATAGGACGGACGATGCCAtgtaaatattatttattttgtgGGCACCACTTTACCTTTGTAGTAGTATCTGTTTTCAACTGCACttaattgagcttgcctggcgcaaTGGAGCCattggaatagtcccaaaagtgcaaaccccgcccatctgacACTCCAGGCCAGGCTCAATTAAATGCTCAAAGTGTTGGAACGAAAACAAAtactgtttgaacccaggtctgaacaTGTCTCATTctctgcctgactgactgactttatgtttgtctcctgtctctttctctgactgTTGAAGGCTTATTATGGTTAATCATTGTTTTTCCATTTAATTTATTATCTTAATTCAACATCTCAAAGTGCACTGCAGGGAATCCGGATTCCGCATGGCAGAAAAATCATATTGCTCACACCGTAAAGAAGCTAATTCAAAGAGCTGTTGAATGTTCATCGAGACACAGCAGCAATTCTATTTGATGACGCTATTGAAAGGGTGCATTTTCACAGTGCAAGAGCAATGTGATTCCTTTTTCCTACTGCGAGTTTGAATGAATATGGTCTTAGTTGTtaagacagacagaagggtgtgACTGGGTTTGTTCACAACGTCTTCTTTACCTTCTGTTACATCAGAAGAGAGAGGGTCCACTTTATATCTCGGTCTAATATCTACTGCTGTGTAACATCGTCAATCCTAACTAGAACAGCCTACTTGTATCCAAACTTCTTAGGCGTATTGCTATATACATATCATACGTGATCTCTCAACGCTCTTCATACTCAGTGTGGCTGTTACATCGGTTGAGAGATGAGTGTGACTACAATGTCTACATTAATCACTCACAGACACTTGTGCTTTGTTCGTTCTCCCTGCCTTGGTGCTATTCTATGATGGGTTATGTATTGCAAAAGCTAGATAGAATGTAGCCTAGGTAGCCACAATGACACTCCAAGGAATTCCAAGGAACAGATGCATCAAGGTCCTAGATGTCCCTCAAGCTTCTTATGCTAATGATGCAGTGACATATCTGAAGAGTCAGAGTCCTCTGTCTGAAAACAGGTTATATGCATAATATTGGCTGTGGCGGACTAGcagttggtagtgcagactgtttATTCAATGGTATAGATGGACAAACCTCATGTAAAGGAAATGAATCTGTTACAAGCGTTCCACTCCCCAGAAAACAAAGAGGGTATTGAATCGTGGTAgtagagacagacggacagacacatCATTGATCATTTTGAGGAGTCTGTTGCCAGCTAATCAAAGGAATGTTCACTTTTTTAAATGAGTTGTAAATAAATGACTGCatcatgtttttatttaatcattatttatgtattatatataaATACGTTCATTTCTTTTTTTATTGCGCAGTGTTAAGTAAAAACCTCTCGaagtgggtgcgtgcgtgcgtgcgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgcatgtgtgtttctgcCTATGTGTGTGTAACGTTAATGATCTTTGCTAAAGCGATACTGATGATTACCTTGTTAAAACAAAGTTGCAGAGCTCTGTCCTTTTCCTACAGGTTGTTTATATGTATCTGACCAGTTGCTG

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0043534 blood vessel endothelial cell migration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2641229 lncRNA upstream 13804 23446151 ~ 23450031 (+) False G2308991
TU2641231 lncRNA upstream 15485 23446151 ~ 23448350 (+) True G2308991
TU2641171 lncRNA upstream 126140 23337496 ~ 23337695 (+) True G2308936
TU2641106 lncRNA upstream 227378 23235947 ~ 23236457 (+) True G2308882
TU2641096 lncRNA upstream 239005 23222533 ~ 23224830 (+) True G2308873
TU2641347 lncRNA downstream 185089 23654912 ~ 23658368 (+) True G2309092
TU2641455 lncRNA downstream 372948 23842771 ~ 23843517 (+) True G2309185
TU2641462 lncRNA downstream 380033 23849856 ~ 23860777 (+) True G2309190
TU2641491 lncRNA downstream 428964 23898787 ~ 23925335 (+) True G2309216
TU2641525 lncRNA downstream 449722 23919545 ~ 23921576 (+) False G2309237
XR_005041390.1 mRNA upstream 249217 23199007 ~ 23214618 (+) False LOC118946519
XM_021560155.2 mRNA upstream 343792 23107982 ~ 23120043 (+) True LOC110488125
XM_021560154.2 mRNA upstream 387795 23072517 ~ 23076040 (+) False LOC110488124
XR_005041392.1 mRNA upstream 394090 23063001 ~ 23069745 (+) False LOC110489407
XM_036971659.1 mRNA upstream 394756 23062213 ~ 23069079 (+) False LOC110489407
XM_021560163.2 mRNA downstream 5951 23475774 ~ 23540812 (+) True LOC110488130
XM_036971654.1 mRNA downstream 288470 23758293 ~ 23883531 (+) False LOC110488131
XM_036971655.1 mRNA downstream 288472 23758295 ~ 23814145 (+) False LOC110488131
XM_036971651.1 mRNA downstream 288472 23758295 ~ 23883531 (+) False LOC110488131
XM_036971653.1 mRNA downstream 288472 23758295 ~ 23883531 (+) False LOC110488131
TU2640356 other upstream 859114 22604320 ~ 22604721 (+) True G2308224
TU2639980 other upstream 1047543 22406017 ~ 22416292 (+) True c32h5orf49
TU2638805 other upstream 1876401 21587088 ~ 21587434 (+) True G2306825
TU2638636 other upstream 2139939 21320623 ~ 21323896 (+) True G2306688
TU2638627 other upstream 2152028 21307558 ~ 21311807 (+) True LOC110488072
TU2641501 other downstream 509527 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other downstream 509645 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other downstream 509734 23979557 ~ 23980779 (+) False LOC110488133
TU2641635 other downstream 681864 24151687 ~ 24157436 (+) True LOC110488142
TU2644105 other downstream 2265371 25735194 ~ 25736847 (+) True G2311528

Expression Profile