RNA id: XM_021560247.2


Basic Information

Item Value
RNA id XM_021560247.2
length 1950
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110488160
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 24943427 ~ 24951969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCACAAGCGCAGAGAATCATTGGGATTTCCTTGTTGTCAAAACACAGAATGGATGCTGTgattttagctaacgttagctagctaaatcacTTCAAAGTTACGTAGATACCCAGTTTATTGCTATAATAATTGTAATCTCTCTATTTGTCCAACTCTGTCAGCTTTTAAACCAAGGTTTTTGCGTTATCGAAATGGGGAAAGGTTGCAAAGTTGTGGTGTGTGGTTTGGCATCTGTAGGAAAAACAGCCATCCTTGAACAGCTGTTGTATGGCAATCACGCTGTTGGTTCAGAGTCCACTGAGACCCAGGAGGATGTGTATGTGGCATCGGTGGAAACGGATCGTGGTGTAAAGGAACAGTTACGTCTCTATGACACCAGGGGGCTCCACGACGGCCTGGACCTTCCCAAGCACTACTACTCTGTGGCAGACGGCTTTGTGCTGGTCTACAGTGTGGACAGCCTGGAGTCCTTTAAGAGGGTGGACGTCCTCAAGAAGGAAATAGACAAGTCCAGAGACAAGAAAGAGGTGATGGTGATCGTGCTAGGGAACAAGACAGACCTGCGTGAGCGTCGTCAGGTGGAGCAGGAGGCAGCGCAGCAGTGGGCACGGGGGGAGAAGGTCAAGCTCTGGGAGGTCAGCGTCACTGAGAGGAACTCTCTCATCGAACCCTTCACCATGCTTACCAGCCGCCTCACACAGCCTCAGAGCAAGTCTGCCTTCCCTCTTCCAGGACGCAAGAGCAAGGGCACGGCGTCCAACGACATATGAACTGAACTCAACCTCAAGAGCACCTAAGTTCCAAGTACTTAAGGGGGGAGATGTTACAGAGTAGGGTTGATGAGTTAGCCAGCCAACTTCAATTAATATTCTGACTTCATATCACCATGACTCTACATTCCATAGACAACCAACAACCCATATTAAGagctttttatttgattttttattgaCTAGCAAATCAAGAGATGTATCTTAATGTTTATCAAAGTGAGCTGGCTAAATGAGTGAGCCTGCTTTTTGGTGTCATCATACACCCCTCTGGTTTCAGTGTGTCCCATCCTATGGGATGACTATAGTAGCCGCTGTACAGCAAGGTCTAGGCCCATCTAATGCGCCTTTAGAGTGAGGCATATTACCTAGTGTGTGGCCTACTACCATATAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATAGCCTACTACCATCTAGTGTACAGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTATGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTATATGGCCTACTACCATCTAGTGTACGGCATATTACTAGATACTACCTAGTGTATGGCCTACTACCATCTAGTGTATGGCCCGGtagcaataaaaaaaacaatggtACGACCTTGATCAGGTATGTTGCTCATGTCTGATTATTAAATGTCTGTAAATGGTTGTTTTTGTGTATTTGTTAATACAAAAGCTGTGTAGTTTATTAGCTTTGTACATGTTTTATTTACCTAATTTATTTGTCACTTTACTAAAAACTTCATTCCTAGCGGGTAGGAATGGGATGAAATGTGGCTTCTGTctctcctgaagtgtacactcgtTCGGTACTACAAACGTagaagcattggattggtggaggcatgggcCAGGACATTCCACCATATTTCTGAAAGTAATTTTCTGTGAATACTGAGGATGGAGGGATAATTTTAACATTGCCTGTGTCCTTCATGTCTTGTGTGAGACCTAGCTaaataaatgtcatattttatGCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2642137 lncRNA upstream 19213 24921035 ~ 24924214 (+) True G2309779
TU2642093 lncRNA upstream 159921 24782673 ~ 24783506 (+) True G2309741
TU2642051 lncRNA upstream 202949 24740250 ~ 24740478 (+) True G2309703
TU2642049 lncRNA upstream 204724 24738438 ~ 24738703 (+) True G2309701
TU2642048 lncRNA upstream 205538 24737640 ~ 24737889 (+) True G2309700
TU2642169 lncRNA downstream 38432 24990401 ~ 24999060 (+) True G2309805
TU2642254 lncRNA downstream 202165 25154134 ~ 25154344 (+) True G2309886
TU2642264 lncRNA downstream 218255 25170224 ~ 25170474 (+) True G2309895
TU2642267 lncRNA downstream 232358 25184327 ~ 25184575 (+) True G2309897
TU2642270 lncRNA downstream 237147 25189116 ~ 25189319 (+) True G2309900
XM_021560231.2 mRNA upstream 28127 24797318 ~ 24915300 (+) False LOC110488157
XM_021560232.2 mRNA upstream 28127 24797318 ~ 24915300 (+) False LOC110488157
XM_021560234.2 mRNA upstream 28127 24797318 ~ 24915300 (+) False LOC110488157
XM_021560239.2 mRNA upstream 28127 24797318 ~ 24915300 (+) False LOC110488157
XM_021560242.2 mRNA upstream 28127 24797319 ~ 24915300 (+) False LOC110488157
XM_021560251.2 mRNA downstream 98326 25050295 ~ 25061664 (+) True LOC110488162
XM_021559481.2 mRNA downstream 115028 25066997 ~ 25083433 (+) False mtf
XM_021559482.2 mRNA downstream 115030 25066999 ~ 25083433 (+) False mtf
NM_001124492.1 mRNA downstream 115313 25067282 ~ 25083414 (+) True mtf
XM_036970890.1 mRNA downstream 135398 25087367 ~ 25110258 (+) False LOC110489411
TU2641635 other upstream 785991 24151687 ~ 24157436 (+) True LOC110488142
TU2641501 other upstream 962648 23979350 ~ 23980779 (+) False LOC110488133
TU2641502 other upstream 962648 23979468 ~ 23980779 (+) False LOC110488133
TU2641493 other upstream 962648 23979557 ~ 23980779 (+) False LOC110488133
TU2640356 other upstream 2338706 22604320 ~ 22604721 (+) True G2308224
TU2644105 other downstream 783225 25735194 ~ 25736847 (+) True G2311528
TU2644579 other downstream 967183 25919152 ~ 25919800 (+) True G2311978
TU2644928 other downstream 1373183 26325152 ~ 26325383 (+) True G2312300
TU2645416 other downstream 1781335 26733304 ~ 26733645 (+) True G2312752
TU2645462 other downstream 1864715 26816684 ~ 26820896 (+) False LOC110488193

Expression Profile