RNA id: XM_036971197.1


Basic Information

Item Value
RNA id XM_036971197.1
length 4800
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC110488198
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 27848227 ~ 27863819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCAGCTAACCGACGCTAGTGGTTATTGGCAAGTGAGCCAAACGGCTATTCCAACTAGCTAGCGTTATTTTAAAACTCTTCAGCTAGCTACCAAACTAAATGGAAAAAATAATATAGCTAGTATTCTCCCAAATAAAGTTACATTTGCTTCGTCCCGCAACGAGCCAGGTGCTTAGGGTGTGCTACTTGCAGGATGTATGCCGTGTACCGCCAAGCCCACTCCCCCACCGCCATCGAGTTTTCTGTCTACTGCAACTTCATCTCCAACGAGGAGAAGAACCTGGTCGTCGCTGGAACATCTCAGCTTTACGTCTACAGGATCATTCACGATGTGGAGAATGCTTCAAAGACAGACAAATCACCAGATGTCAAGAGTCGTAAGGAGAAGCTTGAGCAGGTGGCTTGTTTCTCCCTGTTTGGTAACGTCATGTCCATGGCCTCTGTTCAGCTGGTAGGAGCCAACAGGGATGCTCTCCTGCTCAGCTTCAAAGATGCTAAGCTGTCAGTGGTGGAGTATGATCCAGGAACACATGATCTGAAGACTCTCTCACTTCACTTCTTTGAGGAGCCAGAGCTGAGGGATGGGTTTGTCCAGAACCTGCACATCCCCATGGTCCGTGTGGACCCAGAGAACCGCTGTGCTGTGATGCTGGTGTATGGCACCCAGCTGGTGGTGCTGCCATTCAGAAAGGACACGCTTACTGACGAACAGGAGGGAGTAGTGGAAGGGCCCAAGTCCAGCTTTCTTCCCAGCTACATCATAGATGTCCGTGAGCTGGATGAGAAGCTTCTGAACATTGTCGATATGAAGTTCCTCCACGGTTACTATGAACCCACACTGCTCatcctgtatgagcccaaccagACGTGGCCTGGGCGTGTAGCAGTGAGACAGGACACCTGCAGTATCGTAGCCATCTCTCTCAACATCATGCAGAAGGTTCACCCTGTCATCTGGTCCCTCAGCAACCTGCCCTTTGACTGCACACAGGTCATGGCTGTGCCCAAGCCCATTGgtggtgtggtggtgtttgcTGTCAACTCCCTGTTATACCTCAACCAGAGTGTTCCTCCATATGGAGTGTCACTCAACACACAGACCACTGGGACCACCGCTTTCCCCCTGCGTATACAGGAGGAGGTGAAGATCACACTAGATTGTTCCCAGTCCACCTTCATCGGCTCTGATAAGATGGTCATCTCTCTAAAGGGAGGAGAGATcTATGTGTTGACCCTGATCACTGATGGCATGAGAAGTGTCCGGGCCTTCCACTTTGACAAGGCTGCTGCCAGTGTCCTCACCACATGTaTGATGACCATGGAGCCTGGGTATCTGTTCCTGGGGTCCCGGCTGGGAAACAGCCTCTTGCTGAAATACACAGAGAAGTACCAGGAGAATCCAGAGAAACCACCAGTGGAGGAGGACAAAGGGAAGGAAGAGGAGACCGATGAGGAGAAGCAGGAGGAACCTCCCAGTAAAAAGAAGAGAATTGATTCCTCTACCAACTTGACAGGTAAGAACCAACTGCCTGATGAGGTGGATGAAATTGAGGTGTACGGGAGCGAAGTGGCGTCTGGCACTCAGTTGGCCACCTACTCCTTTGAGGTGTGTGACAGCATATTGAACATCGGACCATGTGCTGGTGCGTCCATGGGGGAGCCAGCCTTCCTCTCCGAAGAGTTCCAGACCAACCCAGAGCCTGACCTGGAGATAGTGGTGTGTTCTGGTTTTGGGAAGAACGGGGGTCTATCCGTGCTTCAGAGGAGCATCCGTCCCCAGGTGGTCACCACCTTTGAGCTGCCAGGTTGCCATGACATGTGGACTGTCATCCCCAATGAGATGAAGGAGAAAggcaagaagaaagacaagcCTCCAGCAACGGAGGAAGAGGGTGAGACCCctgaggaagaggaggcagaggagaagcCTGCGCCTGCGCCAGTGGAGGGCGACAAGAAAAAACATGGCTTCCTGATTCTCAGCAGAGAGGACTCCACCATGATCCTGCAGACGGGCCAGGAGATCATGGAGCTGGACACCAGTGGTTTTGCCACCCAGGGGCCCACTGTGTTCGCTGGGAACATCGGAGACAACAAATACATCATCCAGGTCTCCCCCATGGGCATACGGCTActggaaggagTGACGCAGCTGCACTTCATCCCGGTGGACCTGGGTTCTCCCATAGTGCAGTGCTCCGTAGCGGACCCCTATGTGGTCATCATGACGGCAGACGGAGTGGTCACCATGTTCGTCCTGAAGACCGACTCCTACATGGGCAAGACCCACCGGCTGGCCCTGCAGAAACCACAGATAGCTGCTCAACCCCGAGTGATTACGCTGTGTACGTTCCGTGACGTCAGCGGGATGTTCACCACAGAGAACAAGCAGACCTCTCACACCAAGGATCAAGACACCATGTTCAACAGCCAATCAGAGACTGAGACCATCATGCAGGATCTCAGTAACACGgtggatgatgaggaggagatgtTATATGGAGACTGTAACCCAGCAGGCATCACCCCCACCAAGGACGAGTCCCACCCTGGCTACCACCCCTCTGGGGCCCTGGGTGGGGGGTCCGAGGGGAGGTCGGGACGAGCTGAACCGACACACTGGTGCATGATGGTCCGCGAGAACGGCGTCATGGAGATCTACCAGCTACCTGACTGGAGACTGGTGTTCCTGGTCAAAAACTTCCCTGTTGGCCAGAGAGTGTTGGTTGACAGCTCCGCCGGCCAATCGGCAGCCCAGGGGGAGGGGAAAAAGGAGGAAGTGACACGACAGGGAGAGATCCCATTGGTCAAAGAAGTGGCCCTGGTGTCGCTCGGCAACAACCACTGCAGACCCTACCTCCTGGTCCATGTTGAACAGGAGCTTCTGATCTATGAAGCATTCCCATATGACCAGCAGCAGGCTCAGAGCAACCTGAAGGTCCGCTTCAAGAAGATGCCCCACAACATCAACTTCCGGGAGAAGAAGTCAAAGGTGAAGAAAGATAAGAAGGCTGAAGGTCAGGCTGGTCCCAGCGAGGAGGGGCCAGCGGTGGTCAAAGGTCGTGTGGCCAGGTTCAGATACTTTGAGGACATCTCCGGTTACTCTGGGGTGTTCATATGTGGCCCCTCCCCTCACTGGATGCTGGTGACATCACGAGGAGCGTTGAGGCTCCACCCCATGACAATCGATGGACCAATCGAGTCCTTCTCCCCCTTCCACAACATCAACTGTCCCAAAGGCTTCCTCTACTTCAATAAGCAGGGTGAGCTGAGGATCAGTGTTCTACCCACGTATCTGTCGTATGACGCCCCCTGGCCAGTCAGGAAGATTCCTCTGAGGTGTACGGTTCACTATGTGTCCTACCATGTGGAGTCCAAGGTGTATGCAGTGTGCACCAGTGTGAAGGACCCCTGCACTCGCATCCCCAGAATGACCGGAGAGGAGAAGGAGTTTGAGACCATAGACAGAGACGAGCGCTACATTCCTCCTCAGCAGGAGAATTTCTCCATTCAGCTCATATCTCCTGTCAGCTGGGAGGCCATCCCTAACACACGAATTGACCTGGAGGAGTGGGAACATGTGACGTGTATGAAGACTGTGGCGTTGAGGAGTCAAGAGACGGTGTCTGGGCTGAAGGGATACATAGCTGCTGGTACTTGTCTCATGCAGGGGGAGGAGGTCACCTGTAGGGGCCGGATACTGATCCTGGATGTGATTGAGGTTGTCCCGGAACCTGGTCAGCCCCTGACGAAGAACAAATTCAAggttctgtatgagaaggagcaGAAGGGACCGGTCACAGCTCTGTGTCACTGCAGCGGATACTTGGTCTCTGCCATCGGACAGAAGaTTTTTCTGTGGAGTCTGAAGGACAACGACCTGACAGGCATGGCCTTCATTGACACCCAGCTTTACATCCACCAGATGTTTAGCATCAAGAACTTTATCGTGGCAGCTGACGTCATGAAGAGCATCTCTCTGCTCAGATACCAGCCTGAGAGTAAGACTCTTTCGCTAATTAGCAGGGACGCCAAGCCTCTGGAGGTCTACAGTGTAGAGTTTATGGTGGATAACAACCAGCTGGGATTCTTGGTGTCCGACCGAGATCAGAATATATCGGTGTACATGTATCTGCCTGAAGCTAAGGAGAGTTTCGGGGGCATGCGTCTGCTGAGGAGGGCAGACTTCAACGTGGGAGCTCATGTCAACGCCTTCTGGAGGATGCCCTGTCGAGGGGCACTGGACACAGCCACCAAAAAGACCCTGGCCTGGGACAACAAGCACATCACATGGTTTGCCACTCTGGATGGCGGCATCGGGTTGCTGCTACCCATGCAGGAGAAGACCTACCGCAGATTGCTGATGTTGCAGAATGCTCTCACCACCATGCTGCCACACCACGCCGGGTTAAACCCCAAGGCATTCAGGATGTTGCATGCTGACCGGCGGCAGCTCCAGAACGCGGTGCGGAACATTCTGGATGGAGAGCTGCTCAACAAGTACCTGTACCTCAGCACCATGGAGCGCAGTGAGCTGGCCAAGAAGATTGGCACCACCTCTGATATAATCTTGGATGATCTCCTTGAGGTTGACAGGGTGACTGCTCATTTCTGAGAGCAGCATCCTTGACTACGTGTGAGACCCAGGATCTTCCATCGGAAAATGCTTTTTGATATCTATGTTCTGTATGGAAACTTATGCGTTTAATCAATTTTGTTCAGTCATAAGGAGTTCGTAAACATGTTTCTCAGAATATTTTGTAAGTAAACTTTATTAAAAAAAGTGGATTGTACACTG

Function

GO: NA

KEGG:

id description
K14401 CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2646111 lncRNA upstream 15723 27815956 ~ 27832698 (+) True LOC110488197
TU2645959 lncRNA upstream 195335 27590483 ~ 27653086 (+) True G2313263
TU2645891 lncRNA upstream 357149 27489728 ~ 27491272 (+) True G2313195
TU2645881 lncRNA upstream 374599 27473518 ~ 27473822 (+) True G2313185
TU2645822 lncRNA upstream 463002 27384878 ~ 27385419 (+) True G2313129
TU2646168 lncRNA downstream 32644 27896463 ~ 27961415 (+) True G2313453
TU2646172 lncRNA downstream 39565 27903384 ~ 27903946 (+) True G2313457
TU2646290 lncRNA downstream 219589 28083408 ~ 28084698 (+) False LOC110488207
TU2646291 lncRNA downstream 219589 28083408 ~ 28085390 (+) False LOC110488207
TU2646296 lncRNA downstream 223139 28086958 ~ 28090128 (+) True LOC110488207
XM_021560309.2 mRNA upstream 362 27836662 ~ 27848059 (+) True parp10
XM_036971193.1 mRNA upstream 15366 27800567 ~ 27833055 (+) False LOC110488197
XM_036971192.1 mRNA upstream 15366 27815877 ~ 27833055 (+) False LOC110488197
XM_036971194.1 mRNA upstream 15366 27815877 ~ 27833055 (+) False LOC110488197
XR_005041346.1 mRNA upstream 312112 27535951 ~ 27536309 (+) True LOC118946492
XM_036971042.1 mRNA downstream 8342 27872161 ~ 27945608 (+) False LOC110488200
XM_021560310.2 mRNA downstream 8344 27872163 ~ 27996123 (+) False LOC110488200
XM_036971041.1 mRNA downstream 8345 27872164 ~ 27996123 (+) True LOC110488200
XM_021560318.2 mRNA downstream 152747 28016566 ~ 28044588 (+) False kcng2
XM_036971389.1 mRNA downstream 152747 28016566 ~ 28044588 (+) False kcng2
TU2645893 other upstream 354686 27493099 ~ 27493735 (+) True G2313197
TU2645715 other upstream 645610 27197844 ~ 27202811 (+) True LOC118946485
TU2645611 other upstream 809236 27033799 ~ 27039185 (+) True G2312933
TU2645462 other upstream 1027525 26816684 ~ 26820896 (+) False LOC110488193
TU2646250 other downstream 180136 28043955 ~ 28045917 (+) False kcng2
TU2646251 other downstream 180136 28043955 ~ 28045917 (+) False kcng2
TU2646260 other downstream 180136 28043955 ~ 28045917 (+) False kcng2
TU2646261 other downstream 180136 28043955 ~ 28047334 (+) False kcng2
TU2646262 other downstream 180136 28043955 ~ 28045917 (+) True kcng2

Expression Profile