RNA id: TU2647616


Basic Information

Item Value
RNA id TU2647616
length 1933
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC110488210
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 28299685 ~ 28384888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttgaTGTCGTCCTTAGCATTAATTGAAAAGTTCACCGGTAAATGTTGTGCCCCTTGCACTGCCCCCCTCTACACTTTTTGAGGATAGGGTCAGATTGGTCTTCCCTACCCACACTGCAGTCACACCCATCGCCACCTGTCAACTGTGAACAAAGGGACGAACGGAGAAGGTGctccttttttcatttttattgaaAGTAGAACCCAAAGTTTGCGCTCGTCTTTAGTTTTTGAAGATGAATTGTTTATATTCTCCTTTTTCACCTGCAGCAGCTCTGTTGTTCAGGGTCTGTTGCTCCCTAACCCATGCCAGGTAAAACTTGAAAGGCAGATGTTTTGGCTTGCTTGTTTTTATTTTGGATTTTAGCTTTGATTTTAGTCTTCTGTGTTTATTTTGTCGTTTTGTTCCTTGGTGGCTGTGGAACTAGCGGTGCCGTGGCTGTATGTCAGAAATACAGCCTGGTGTGCCGTATGTCAGAAACACAGACCTAGGTGCCGTGGCTGTATGTCAGAAATACAGCCTGGTGTGCCGTATGTCAGAAACACAGACCTAGGTGCCGTGGCTGTATGTCAGAAATACAGCCTGGTGTGCCGTATGTCAGAAACACAGACCTAGGTGCCGTGGCTGTATGTCAGAAATACAGCCTGGTGTGCCGTATGTCAGAAACACAGACCTAGGTGCCGTGGCTGTACGTCAGAAATGCAGACCTGGGTGCCGTTGGTCTCTGTGCCCGTAGTAGAAGGGAGGCCTCCTTCGCTAGCGAGTGAAAACTGTGCCTAATACTCAGCAAGGAGATCCATCATTTTTGGTGCTGTTGGTTATTATTACTGTATAACAATACAAAAGaaaggtgaggtgctggctaactactactctcctctcccacaGGGATGAGATTCAAGGTTTTCATGTCCCACAGGGTTAGGGTTCTAGGCTCTCTTCTCCcacagggttaggttagggttctAGGCTCTCCTCTCCCACAGGGTTAGGGTTCTAGGCTCTCCTCTTCTAGATGTGCAATCATGTTAACATTCCATTCTTCCAGTCCTATTGTTTCAGCTGTACGAGTAAACATgacttattttattattattttatatttttattgtgTATGCGTTCTGATGTGCGTGTAGAACCACTAGTCGAAGGGTGTAAAATGTGAAATATGGAAATCCATGTTGTTTTTTTGCTTTTTGCATTTTCCCTTTTTCAGATGTATTATGTTTGATTTTAGGAGACAGTGCAACACAAAAACAAACTTTTGTACATAATCCTGTAAATGTCTTTAAATACTTGAGCCTTTTCTGGGGTGAAGGAAGGAATGATGCCTCTAAAGGTATTAGCGGAAGCAAGGGAGGAAGTGCTTGATGAAGAAAAAGCCTTACGTTTCAGTTTCTTCATGTGTGTGAGTTTGATGCTTACAGGGTTGCTCTGGTTACGTGTATACATTTAAGTGCTGCTTACATCAGTGAGAAAGATATGGAGTAGCAATGGCcccctattttattttttattttttagctttacttttttaaagaaaaggGAAAATatgttcataaaaaaaaaatgttttaaattttCATTACTGAAAATTCAACAATGTAGTAGCTCATGTTGCACTGAGCTTGCCAGTGGTGGCTGACAAGGTGATCCTATTATCAAGTTTGTTGGTTGTTGTCCTTTACAGAAGACTGAACTGTTTTAGGACTATTTAATGAAAACCAAGTTGGATGTTTTCCACAGAAAGTGGTTGTCAAGTTTTTATGGCCTTACAATGTATTTTATTcagaatttcttttttttttttgcattttctttttctacagtataaactattGCTCACGGTCGGTCTGGCAAGTTAATTTATTAGCGATGCGTCTCCAACTTTCCTTCCACTTGGAAAGATTTCATGTTGGTTATAttgccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2647590 lncRNA upstream 90153 28292291 ~ 28292543 (+) True G2314739
TU2647569 lncRNA upstream 110315 28271735 ~ 28272381 (+) True G2314719
TU2647525 lncRNA upstream 167956 28214472 ~ 28214740 (+) True G2314677
TU2647524 lncRNA upstream 178836 28203641 ~ 28203860 (+) True G2314676
TU2647518 lncRNA upstream 182658 28199808 ~ 28200038 (+) True G2314670
TU2647673 lncRNA downstream 18422 28403246 ~ 28403552 (+) True G2314802
TU2647707 lncRNA downstream 53183 28438007 ~ 28442117 (+) True G2314830
TU2647767 lncRNA downstream 131628 28516452 ~ 28553988 (+) True G2314883
TU2647869 lncRNA downstream 278012 28662836 ~ 28788903 (+) True G2314975
TU2647882 lncRNA downstream 317183 28702007 ~ 28708584 (+) True G2314988
XM_021560322.2 mRNA upstream 290866 28083355 ~ 28091830 (+) False LOC110488207
XM_036970615.1 mRNA upstream 290866 28083392 ~ 28091830 (+) False LOC110488207
XM_021560318.2 mRNA upstream 338108 28016566 ~ 28044588 (+) False kcng2
XM_021560335.2 mRNA downstream 51242 28436066 ~ 28437991 (+) True LOC110488215
XM_021560336.2 mRNA downstream 83926 28468750 ~ 28471360 (+) True LOC110488216
XM_036970818.1 mRNA downstream 598364 28983188 ~ 28991659 (+) False LOC110489419
XM_036970819.1 mRNA downstream 601397 28986221 ~ 28991659 (+) False LOC110489419
XM_036970997.1 mRNA downstream 632737 29017561 ~ 29042431 (+) False LOC110489420
TU2646261 other upstream 335362 28043955 ~ 28047334 (+) False kcng2
TU2646250 other upstream 336779 28043955 ~ 28045917 (+) False kcng2
TU2646251 other upstream 336779 28043955 ~ 28045917 (+) False kcng2
TU2646260 other upstream 336779 28043955 ~ 28045917 (+) False kcng2
TU2646262 other upstream 336779 28043955 ~ 28045917 (+) True kcng2
TU2647771 other downstream 135431 28520255 ~ 28563595 (+) True G2314887
TU2647881 other downstream 313916 28698740 ~ 28703424 (+) True G2314987
TU2649449 other downstream 1537560 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 2433204 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 2448906 30833730 ~ 30835101 (+) True G2317455

Expression Profile