RNA id: XM_036970812.1


Basic Information

Item Value
RNA id XM_036970812.1
length 3443
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110488235
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 29438913 ~ 29447508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATAAAAAAATTTGCAATCCCTTTTCCAAACTATGAAAGGCAGCAACACCCAACAAAGAAAGCATCTAGTCTGCCGGAAAACCAAACGAAGAAAGTGGATTTGCGTGGAAGCTGCGCAATTAGTAGCAGCTTGAACACTTCTGTTTTGCACGCATCCATCATGGTATTAGAGACCCCAAAAAGGATATGCTAGCGATTGCTGTTATTGGATGGAACGAGCTATTTTGGTGGAGGAAAGAAACCATGGGTATTGACTGCATAATATTCAGTGTAACGTTAAACTAGAACTAGCTTAACATTCACATTAAAGGTATTTTAAGCACCTGCCGAGGCCTTGTTTTCTTCGAGTCTAGTCAGTAATCGGCCTGTTTGGAACATTATTAACTTACTCTGCAGTGGCTCGACTTGAGCCGCAGGATTTAGCCTCTAGCTAGCCCTTGGCGAGTCAATTGTTTACAATTTGAAAATTGGCTATAAAGTTTGTCATAAATGTAAATTGTTGTCCACAATTGATTGGTTGTTCTCATGAAGTAAGCCTCGTATACGTGTACGGCCAAACAATTTTAGCTAGCGAACGTTAGCTATCGTAAACTTGGCAGGTGTGGGTCGGTGGgcgcagctagctagttagccataTCAGTATTTACCCGTTACTTATGCCAAAGCTGCTCCAGAAACATCAACAATGTCTTTGGTAGCGTATGCTAGCAGTGATGACAGTGATTCAGACGAAACGTCTAACGTTAGTTCCATCGTCCCGGGTAGCAAACGTGGGGGGCTTTTCGCACGCCTCCCTGACCCCAAAATATCTGCCTCAGAGGCACTAGGAAACGTGCGACCAAGCAAAGGGACAACACACTTCTCTTCACGGAACACTGTGTCAAACGATGGCGACGAGGACTCAGTTACCCGTTCTCAACCGTCCAAGGGAGGGTTGCTTTTCGACTTACCTAAACCGAAGAAGCGAACAGAGCCTGTCAAAATCCCTATACCTGAGATAAAGAGAGGGGATTCTGACTCTGATGAAGATGAACCAAGGAGAAAGAAATCCCTGCCCCAGttgtgcgctgccctattggactcccaatcacggccggaggGTCCTGGCACTGGCCTTTCCTCCCTCCTGCCTCAGCCAAAAAACATGGTTGTGAAGGAGATGCAGAGGGCCCTAGTGCCGCACACCCTCACCAAGCGGCCTGAGCCAAGGAAACCCACAAAGCCCTCCTTAGGGGCCTCCCAGGGCCACCTCAGCTCCAGTGCATCCCCCTCCGCCATCAAAGCAGCAGCTAAATCGGCTGCCCTGCAGCTAGCAAGGCAAATAGCTGCTGAGGAAAGTGACGAAGAACTTGCCCCCGAGAACTACTTCTCCCTGGAAGACAGCGCCAAGCCTCTCCCCGCTGTGGTCCCCAGCTTGAACCCGGAGCCTGTCCCCACCTCAGGCCTGCTACCCGCTCCTCCAGGCATGCAGCGTGGTACATTCCAGTCAGATGCCCCTCTGGACTTTAGCGCAAACCAAGAGGGAGCTTGGGGAGGTCAACAGCTAGGGGTGTACCAGCAGGCCTCGGCAGAGCCTCAGGGTTACTACAACGAGGCTTACTACCAGGATCCAGAGTCTGACCCAGCGTTGCCCGAGCCAGAGCAACCTAGTTCCTCCGCCCTGTTTGATGATGAAGCGTTCATGAGGCTGCAGGGGAAGAGGAACAGGGGCAAGGAAGAGGTGAAGTTCCTGGAGATTAAGGGAGATGACCAGCTGAGCGGCAACCAGCAGTGGATGACCAAGAGCATGACGGAAGAGAAGCAAGAGCGCAAATCCTTCAGCAAGaaaaagGGAGACCAACCCACAGGGCAACAGCGACGCAAGCACCAGATCACATACCTCATCCACCAGGCAAAGGAGCGAGAGCTAGAGCTGAAGAACAACTGGGCTGACAACAAGCTGACTCGCCGGCAAACACAGGCCAAATACGGCTTTTAAGAACCGTAACAGAAGGCTTGGTGGCATGCatagccccccctccccccccccggAGATTTAGAGTAGTACAGTCCAGAAGATTTTCTCAACATGGGACATATACCCTTGCCGTGGGGGAGGGGTTACACACACCTCATAGACCCATCCTTGGAGATGTTAGCACTGACTTTCCTTTTTGTCCCCCCTGTTTGTGGGCCTCCCTGGATTTGATACTTAAAACATTGCTGATATAAACAGTAGTTTTGGTGGTCTATATGATATTTGTTTGTTGGCTGCATAGGAAATCAAACTAATCAGACTGCTGCACAGGCTTTCCTGGGAAATTGTATTTAAATGCAATTTTATGTGGTGGTGGTATTTCACCAGATTACACATTACTGATAATTGGTCGTTCCAGTCTGAGCATAAGAGGAATGTTTTCCTTGCGGAATCCATATTGTATGTTTCCAATGGTGGGACAGTGACGTGCTCTAAAATTCTGTCAATCCAACCACAAGCTTCCCTAGTTTTTTAAATGTTAGGAAACACTTTTTTTCCTTGGTGGAATTTCCCTGTTGTGGAGATGCTTCAACCTGACCTGTTTGGAATACATCTCTTTACTGGATTTTGGGGGAGAGTTAGTCTTTGAAAGGAGCCAGAAACTCCTGTCTGCCAATAAACACAATCATATACAGTGATGACTTATTGGTATAATGAACTGTGCAATTTGAATAAATACTGCCTGTTGCTCAGCCTGTGGAGAATCTTGTAGGATGTTGCCTTCTCAGAGGGAGCATGGATGTGAAATTGGATCCGTTTTGTATTTTACCATCCTGGCTAGCTAACCAGGTTTTTAAATGTCTCTTTTGCCAGACCAACATTTAGTGAGGATTTGGGAATCCATGTTTCTGAAGGGTGCTCTCTGCACATTCTGCTGGTGTTGTGTTATGGTGATTCTGGATCTAAAGgcatcagatactgtatgtatcagAAATATGCTACGGTACATTCCTTGCTTACACTTACCCAATCCTCTCAGATCGTCAAGGGTGTGAATTAAGAGAAATGGAACTTGGAAGGGCAGTTTACTAATCCCATTGCACCTGGATAAACCCCGCCCCCAAAGAAAATGCTGAAAACCAGCATCTCGGTTCTACCTTTCGTGATGAGCTAGCTCAAGTGTTTTGTATATTGACACTCCTATTAAGTCAAAGCAGAAATAATGTAACCATGTTCACAACTTAGCAGGGACAAAGACTGGCGCTGCCAAAAGCACCCCATTGGGGACAATGCTATAGACAGACTGCTAGATTTCTGAAGGTGTTACGGCTAACTACTTTAGGCACTCAGCTCTTAAAGCTCATTAGGAGGTATTTCAATACTGTATATCTATGTAAGAGGCAGGGGAAATACCTTTGTTTTACCCTATACTGTTACATGTTTTGTGCTGTTAcaataaatgtatttaatttcCTGACTTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2648735 lncRNA upstream 20423 29415641 ~ 29418492 (+) True G2315788
TU2648769 lncRNA upstream 32486 29406075 ~ 29406429 (+) True G2315818
TU2648719 lncRNA upstream 43351 29393847 ~ 29395564 (+) True G2315772
TU2648734 lncRNA upstream 88051 29350355 ~ 29350864 (+) True G2315787
TU2648733 lncRNA upstream 88899 29349460 ~ 29350016 (+) True G2315786
TU2648796 lncRNA downstream 13804 29461312 ~ 29461623 (+) True G2315844
TU2648889 lncRNA downstream 148030 29595538 ~ 29628782 (+) True G2315929
TU2649272 lncRNA downstream 198674 29646182 ~ 29646446 (+) True G2316285
TU2649278 lncRNA downstream 206778 29654286 ~ 29654550 (+) True G2316291
TU2649288 lncRNA downstream 216508 29664016 ~ 29664316 (+) True G2316299
XR_002468369.2 mRNA upstream 62797 29369669 ~ 29376118 (+) True LOC110488231
XM_036970998.1 mRNA upstream 69363 29366427 ~ 29369552 (+) True LOC118946464
XM_021560363.2 mRNA upstream 215156 29216201 ~ 29223759 (+) False LOC110488226
XM_021560381.2 mRNA downstream 41369 29488877 ~ 29491478 (+) True LOC110488238
XM_021560382.2 mRNA downstream 48547 29496055 ~ 29506947 (+) False LOC110488239
XM_021560383.2 mRNA downstream 48548 29496056 ~ 29507318 (+) False LOC110488239
XM_021560385.2 mRNA downstream 50251 29497759 ~ 29507309 (+) True LOC110488239
XM_021560395.2 mRNA downstream 67167 29514675 ~ 29520674 (+) True LOC110488242
TU2647881 other upstream 735491 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 875320 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 1391581 28043955 ~ 28047334 (+) False kcng2
TU2646260 other upstream 1392998 28043955 ~ 28045917 (+) False kcng2
TU2649449 other downstream 474876 29922384 ~ 29930951 (+) False G2316421
TU2650483 other downstream 1370520 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 1386222 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1650111 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1650111 31097619 ~ 31127687 (+) False G2317562

Expression Profile