RNA id: XM_036971699.1



Basic Information


Item Value
RNA id XM_036971699.1
length 615
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC118946528
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 30077150 ~ 30077764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaacttcagcacctacgacaaccacaacaacagcacctacaacaactgtagctgccacgacaactgcagctcctgcaacagtattagcatctacgacaaccactgcagccctaacaacaacaactgctgctcctacgaccactacagctccagaacctattacgacaaccactgcagccctaacaacaacaactgctgctcctacgagcactacagctccagaacctattacgacaaccactgcagctcctgcttcaacaactacaacaactacaacttcagcacctacgacaaccacaacaacagcacctccaacaactgtagctcccacgataactgcagctcctacaacagctttagcatctacaacaaccactgcagccctaactacaacaactgctgctgctacgtccactgtaactccacaacctactacggcaaccagtgcagctcctactacaacaactgctgttctaacgaccacagtgactgcagcacctgctacaataactacaacttcagcacctacgacaaccacaacaacagcacctacaacaactgtagttgccacgacaactgcagctcctgcaacagcattagcatctacgacaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2649513 lncRNA upstream 8189 30064890 ~ 30068961 (+) True G2316479
TU2649512 lncRNA upstream 22100 30052060 ~ 30055050 (+) True G2316478
TU2649451 lncRNA upstream 79841 29934770 ~ 29997309 (+) False G2316422
TU2649336 lncRNA upstream 116169 29954235 ~ 29960981 (+) False LOC110489425
TU2649335 lncRNA upstream 124094 29952506 ~ 29953056 (+) False LOC110489425
TU2649344 lncRNA downstream 34567 30112331 ~ 30119439 (+) True LOC110489425
TU2649795 lncRNA downstream 65063 30142827 ~ 30143131 (+) True G2316748
TU2649799 lncRNA downstream 65837 30143601 ~ 30143938 (+) True G2316752
TU2649959 lncRNA downstream 171531 30249295 ~ 30249553 (+) True G2316904
TU2649964 lncRNA downstream 175081 30252845 ~ 30253189 (+) True G2316909
XM_036971564.1 mRNA upstream 45091 30031607 ~ 30032059 (+) True LOC118946498
XM_036970999.1 mRNA upstream 49493 30022055 ~ 30027657 (+) True LOC118946465
XM_036971688.1 mRNA upstream 285589 29790669 ~ 29791561 (+) True LOC110488250
LOC110489422 mRNA upstream 331565 29730204 ~ 29745585 (+) True LOC110489422
XM_021560396.2 mRNA upstream 396955 29672909 ~ 29680195 (+) False LOC110488243
XM_036971565.1 mRNA downstream 21937 30099701 ~ 30100390 (+) True LOC118946499
XM_036971000.1 mRNA downstream 30452 30108216 ~ 30125310 (+) False LOC110489425
XM_021560400.2 mRNA downstream 100860 30178624 ~ 30183914 (+) True LOC110488251
XM_036971349.1 mRNA downstream 113711 30191475 ~ 30224642 (+) False LOC110488252
XM_021560401.2 mRNA downstream 113865 30191629 ~ 30224642 (+) False LOC110488252
TU2649449 other upstream 146199 29922384 ~ 29930951 (+) False G2316421
TU2647881 other upstream 1373726 28698740 ~ 28703424 (+) True G2314987
TU2647771 other upstream 1513555 28520255 ~ 28563595 (+) True G2314887
TU2646261 other upstream 2029816 28043955 ~ 28047334 (+) False kcng2
TU2650483 other downstream 740264 30818028 ~ 30819016 (+) True tmem79a
TU2650554 other downstream 755966 30833730 ~ 30835101 (+) True G2317455
TU2650704 other downstream 1019855 31097619 ~ 31127687 (+) False G2317562
TU2650705 other downstream 1019855 31097619 ~ 31127687 (+) False G2317562
TU2650702 other downstream 1043324 31121088 ~ 31127687 (+) True G2317562

Expression Profile


XM_036971699.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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XM_036971699.1 Expression in each Bioproject

Bar chart with 14 bars.
XM_036971699.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.