RNA id: XM_036971859.1


Basic Information

Item Value
RNA id XM_036971859.1
length 4218
RNA type mRNA
GC content 0.54
exon number 29
gene id LOC110488278
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31497450 ~ 31517784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCTCCGGAAGTTAGTTTGTTTTATTCGGACACAGTCGAAAGCACTGGAGTGAGAGTGAAAGGTGGCCAAACCAAGTAAAAGAAACACATGTTATCCGACGAAGAGCGTGTAAAGAGAGTCTAAACAACAGTCTAGTGTTAGAGGCGCTCCATTGATACAACAAAATCATTTAGAATTTTCCCCGAACCCCAGTGTCTAACCCCTCAAGTCCTCTGGGGCCAGACGAAGCGAGGCGGGAGGTGATGGAGCCTTCACCGGCAAAGGGGAAACCGCAGGGTCGCCTATTGGTGTCCACGACCCTGGACGCAAAAGATGAGCTTGAGGAGcgtttggagaggtgtgtggggaTTGTCACTTCGTTGACAAATGGCCTGTCGGAGCGTGAGGCCAACGATGCCATCACAGCTAATGTGTGTAAGGGCCCTCAGCAGCACGAGGAGGTGTGTCTGGGACTCTTCGCTCTGCTGCTCACCGAGCCTCCACAGGCACAGCGGTGCTACAGAGACCTGACCCTGGTGAATAGGGACGGCATGAACGTGATCCTGATCAAGATCAACCAGATCCTCATGGAGAAGTTCCTCAAGCTGCAGGACGTGTGCCGCACACAGttGGTGTGGTTGGTGAGGGAGCTGGTGAAGAGTGGCGTGATCGGCGCGGACGGCGTCCTCATGACCCTTATGAAGCAGATCGCAGGAGGAGACATCACCAGTAAGAACCTGTGGCTGGCTGAGAATGTTCTGGACATACTGCTGGATCAAAGGGAGTGGGTTCTGAAGAGTGGCATGCTGATAGCCATGTCCGTGTACACCTATCTGCGCCTCATCGTGGACCACGGCACCCCGGCACTgctggtcctcagacagaaggagGTTGACTTGTGTATCGGCCTGCTccgagagaagTTTATGGAGTGTTTTATCATTGGGAGAGACCTGGTGCGTCTGCTGCAGATCGTGGCCCGGATCCCAGAGATGGAGCTACTGTGGAAAGACCTGCTCCACAACCCCCAGGCCCTCAGCCCTCAGTTCACTGGTTTGCTGCAGCTCCTGACCGCTCGCACATCCCGCAAGTTCCTGGCTTGTCGCCTCACACCAGACATGGAGACCAAACTGCTCTTCATGACCTCcaggGTGCGTTTTGGCCAGCAGAAGCGCTACCAGGACTGGTTCCAGAGACAGTACCTGTCCACGGCAGAGAGCCAGTCGCTGCGCTGTGACCTGATTCGCTACATCTGCGGCGTGGTGCACCCATCCAATGAGGTGCTGAGCTCTGACATCCTGCCCCGCTGGGCTATCATTGGCTGGCTGCTCACCACCTGCACGTCTAACGTGGCGGCCTCGAACGCCAAGCTTGCCCTGTTCTACGACTGGCTCTTCTTCAGCCCAGAGAAGGACAGCATCATGAACATAGAGCCGGCCATCTTAGTGATGCACCACTCCATGAAGCCTCATCCAGCCATCACTGCCACTCTCCTGGACTTCATGTGTCGGaTCATCCCTCACTTTTTCCCCCCTCTGGAGGGGCAGGTGCGGCAGGGTGTCTTCAACTCTCTCACCTTCATCATGGAGAAAAGAGTGCTGGCTCATCTAGCTCCTCTGTTTGACAACCCCAAACTGGATCGGGAGCTGCGCTCCATGCTGAGGGAACGCTTCGCAGAGTTCTGCAGTTCCCCCTCACCCCCTACTGAGGGAAGGGATGAAGGTGCAAATGAAATGAAAATGGAGGAGTCTGTTTCCTTGGAGATGGACAATCATGTTCTGCTTGACAAGGAGGATGGTTGCTACGACAACACGGAGGCTGCCTTCAGCGACGATGAGGAGGAGGTTAACAACAAGGGCAATAAAAAGCGGGAGTTCAGATTCCACCCAATCAAAGAGGCCGTTATTGAGGAGCCCGCTGACATCACTCCCTACGTGGATCAGTTGGACGACACAATGAAGGAGAAGGTGTTGCAGTTACAGAAAGGAAGTGACACAGAGGCACATTGTGAAGTCATGCAGGAGATAGTGGACCTGGTCCTGGAGGAGGACTTTGACTCAGAGCAGATGTCCACTCTGGCCTCCTGTCTGGCTGAGCTCTTCAAGGGCCACTTCAGAGGAGACGTACTGCCTGACGACATCACAGAAGAGTCGCTGGAGGAGTCTGTGTGTAAGCCTGTGTGCCTGGTGTTCAGGAACCTTTGTCAGATGCAGGAGGACAACAGTGGCTTCTCAGTGCTGCTGGAGATGCTGGCAGAGCTCTACCAGAAACAGCCCAAGATCGGCTATCACCTGCTTTACTACCTCAGGGCCAGTAAAGCAGCGATGGGGAAGATGAGTCTGTACGAGTCGTTTGCCCAGGCCACAGCGCTGGGAGACCTGCACACCTGTCTCATGATGGACATGAAGGCCTGCCAGGAGGACGACATCAGGCTGCTCTGCTATCTCACACCATCCATCTACACCGAGttccCAGATGAGACATTGCGCAGTGGAGAGCTACTCAACATGATTGTAGCAGTCATCGATTCAACACAGCTTCAGGAGCTGATGTGTCACGTGATGATTGGCAATCTGGTGATGTTCCGCAAGGACTCTGTCCTCAATATCCTCATCCAGTCTCTGGAATGGGAGACGTTTGAGCAGTACAGTGCCTGGCAGCTCTTCCTGGCCCACAGTATTCCACTGGAGACCATTATCCCCATCCTGCAGCACCTCAAGTACAAAGAACACCCAGAAGCACTCTCCTGTTTGCTGTTGCAACTACGCAGGGAAAAACCCAGTGGTGAGATGGTGAAGATGGTGCTGAGTCGGCCCTGCCACCCGGAGGACCAGTTCACCACCAGTATCCTGCGCCACTGGGCGGCCAAGCACGACGACGTCCTGGGGGAACATATCAAGGCCCTGCtcatcaagaacaacaacatGCCACGAAAACGCCAGAGTCTGCGTAGCTCCAGCAGTAAACTGGCCCAGCTGACCCTGGAACAGATCCTGGAGCACATGGACAACCTGAGGCTGAACCTCAGCAACACCAAGAACAgctTCTTCACACAGACGCCCATTCTGCAGGCACTGCAGCATGTCCAGGCCAGCTGTGACGAGGCCCACAAGATGAGATTCAGCGACCTCTTTTCATTGGCCGAGGAGTACGAAGAGCCCTCCTCCAAGCCTCCCAAGTCACGGCGCAAGGCCCCCGCCTCCTCCCCGCGGTCGCGTAAGGGAGCGGTCACCCCTGTGAGCAATGAGGAAGAGAGCGCATCTAGCAGTGCCTCGGAGGAAGAGGACTCCAAACCCAAAGCCcccaagaggaagaggaaaggctCATCTGCGGTGGCCTCGGACAGCGACTGACAGCCCCACAACCAACCCGCTCCCACCTGTCATAGTGACATCCCTGTAGACAGGTCCATCAGCCAACCAGCTTCTCCAAACCACTGAGGAAACCCCGACCCCAGAGACACTCAACAAGAGGGGTCGGAGCTCCTCCGCATGGACTCTAGTGCTACTGGCCGGAGCCATGGAGCCACGGAGCCTCACCTCTCACTGGTCATTGGCTGCTTTGTGTCAGTTGGTCTGGCTGGATTGGTCAGGGGGAGCATTCCGAGGGGAAATGCCAGTCGCTGTGGCACAGACTGACAGGAGTACTGTTACGAGAGGGATATCTATATCCTTGAGGAAAGGATTACATGACTAGACTGGATGTTTGGGGGGTAAATGTGTTGCTCTATTGTCACTTAGTTGTCTGCCTATCACACTGCACTTAGAGACATCAGACAAAGCATTTTATAAGCCATGACCATGATGACCGACCAACCAGCAAGACCATCCAGTCCAGGCGATTTTAACAGAGGCACGTGTCAAAGATTTAAGTGATTCCTaccgttttttgggggggggggggggggggggagaggtgcGAGAGTTGTTGAAGTGAGGAGAAAGTCACCTTTGTCCCAATCCCATAGAGAAAAATGTTCCTGCCCCACATCTGAAAAACTCAACATGCCTGTTCACCCTTCATTTCTGATTGGCAAGAAGCGAGACCATGGACACGTTCTCATCGGATCATTTTAACCACAGATGGTTGGACTGTATGCGAGGTCAGAAATAAAAGACTGTATGAATGGAGGAGCCAGATGTAGTTGCTGAACTTTTTAATGGAAATGTCTTTCTACTGAACTATTTTCATAAAAGATCataacaattaaaaaaaaaggGCTACAAAAAAATAGAA

Function

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component

KEGG:

id description
K13140 INTS3; integrator complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2650921 lncRNA upstream 184630 31312421 ~ 31312820 (+) True G2317754
TU2650849 lncRNA upstream 188692 31234987 ~ 31308758 (+) False G2317695
TU2650834 lncRNA downstream 4466 31522250 ~ 31522683 (+) True LOC110488276
TU2651038 lncRNA downstream 9615 31527399 ~ 31527748 (+) True G2317866
TU2651039 lncRNA downstream 11276 31529060 ~ 31529270 (+) True G2317867
TU2651040 lncRNA downstream 11857 31529641 ~ 31529939 (+) True G2317868
TU2651041 lncRNA downstream 13961 31531745 ~ 31531963 (+) True G2317869
XM_021560440.2 mRNA upstream 11716 31370711 ~ 31485734 (+) False LOC110488277
XM_021560441.2 mRNA upstream 11716 31371667 ~ 31485734 (+) False LOC110488277
XM_036970964.1 mRNA upstream 11716 31371668 ~ 31485734 (+) True LOC110488277
XM_036971177.1 mRNA upstream 144555 31345583 ~ 31352895 (+) True LOC110488285
XM_036971178.1 mRNA upstream 144817 31345575 ~ 31352633 (+) False LOC110488285
XM_021560439.2 mRNA downstream 4474 31522258 ~ 31542403 (+) False LOC110488276
XM_021560436.2 mRNA downstream 4476 31522260 ~ 31542403 (+) False LOC110488276
XM_036971861.1 mRNA downstream 4476 31522260 ~ 31542403 (+) False LOC110488276
XM_036971860.1 mRNA downstream 5145 31522929 ~ 31542403 (+) False LOC110488276
XM_021560448.2 mRNA downstream 38696 31556480 ~ 31578762 (+) False LOC110488283
TU2650902 other upstream 156919 31334819 ~ 31340531 (+) True LOC110488286
TU2650838 other upstream 273888 31222117 ~ 31223562 (+) True G2317685
TU2650704 other upstream 369763 31097619 ~ 31127687 (+) False G2317562
TU2650828 other downstream 99390 31617174 ~ 31621137 (+) True LOC118946484
TU2652044 other downstream 417099 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 417130 31934914 ~ 31941550 (+) False LOC110488305
TU2652047 other downstream 417130 31934914 ~ 31941856 (+) False LOC110488305
TU2652037 other downstream 417179 31934963 ~ 31941550 (+) False LOC110488305

Expression Profile