RNA id: XM_021560448.2


Basic Information

Item Value
RNA id XM_021560448.2
length 2645
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110488283
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31556480 ~ 31578762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTACTCTGTCGCGTTTTTCCGGAGAGGAGCCGGCAGGTGACAGTGAGGGTCTTCTTTACAGCATAGGTGCCAATTTatgtttctgtatttaatttgaaGATTTTGTTCACCTGAATTATTTAGAAATATGGCTTCCTTTTTGTCGGTCATCCCTCCTTTCTTGTTATCGGTTCTCATATTTTCTGGAGCGGTAGTCGCACGGGGTGATGTGCTCGAGTTAGGGGACGCAGATTTCGATTACCTGGCAGCGGAGCACGAGACCATGCTAGTGAAATTCTACGCTCCATGGTGTGGACATTGTAAGAAACTAGCCCCAGATTTTGAGACCGCAGCCACTCGACTGAAGGGGACAGTTCCACTTGCTAAGGTGGACTGCACAGCGAGCCCAGACACATGTGGGCGTTTTGGGGTCACAGGGTACCCCACGCTCAAGATCTTCAGAAACGGAGAAGATGCCTCGTCCTATGACGGGCCACGCTCCGCAGATGGCATTGTCCACTTCATGAAGAAGCAGGCTGGACCCAACTCTGTTACCCTGCGTAGGGAAGCAGATCTCGAGgcctttgtcaaccactttgacgCCAGTGTAGTGGGATTTTTTTCTGGGCCTGACAGTGGTCAGCTGGCAGAGTTTCTGAAGGCGGCCAGCGTCATGAGGGAGCACTTCCGCTTCGCCCACACCATCGACATGACCCTGGGCCTCAAACACGGGGTGGACACTGAGCGTGTTCTGCTGTTCAGACCCCCAAGACTGAGTAGTAAGTTTGAGGAGAGCGTGCTGCGCTTCACTGAGACGATCACCACCCACACACTGCGGCGCTTCATCAGAGACAACATTTTTGGAATGTGCCCCCATCTGACCAATGAGAACAGAGATAAGCTGAAGGGGCAGGACTTGTTGACTGCGTACTATGATTTGGACTACCTGCAGAACCCCAAAGGCACCAACTATTGGAGGAACAGGGTGATGAAGGTGGGTTCTCAGTTTGCGTCCCAGGGCCTGAGTTTTGCCGTGGCCAATCGCAGGGACTTTGTGGATGAACTGGAGGAGGAGTTTGGTCTGGGGTCGTCGGACGGAGGAGATCTACCCTTCGTAACCATCAGAACACAACAGGGATTCAAGTACACCATGAGGGAGGAGTTCACGCGAGATGGGAAGTCCCTGGAAAGATTCCTGGAGGATTACTTTGCTGGACGACTAAAACGTTACATCAAGTCGGAGCCCATCCCTGAGAAAAACAAAGGCCccgtcaagGTAGTGGTAGCGGAGTCATTTGAGGAGATTGTGAATGACCCGGAGAAGGACGTGCTGATTGAGTTCTATGCCCCCTGGTGTGGTCACTGTAAGAGCCTGGAGCCCAAGTACAAGGAGTTGGCAGAACAGCTCTACTCTGACCCTAATATTGTAATTGCCAAGATGGACGCCACAGCCAATGATGTTCCACAAGGCTTTGATGTGCAAGGGTTTCCCACCATCTACTTTGCTCAGGCAGGCAAGAAGGACCAGCCCAAGCGATATGAGGGAGCCCATGAAGTGAAGGACTTTATCAAGTACTTGAAGAGAGAATCCTCGCACGTTCCTGTTGTCAGCGGAGTGAGAGAAGACCTGTGAACAGAAGACAAAATCAAAATGAACATCAACGGCATCAACTCACCAAGGAGCAGTTTGGTGCAGGTTTGTCATACATCAAATACCATGAGATGAATGGACGTTGTATAATGACACTGTAATAACACATTTGTTTATAGGTCTTGACTTACCACCTGTATGTCAGAACTATAGGTCTTCTTCACCACTATAAGCCATACCATCCATTCCACCAATGATAACCCATCAACACCCCTAGATTGGCAGCTAATATTGAGCACTCTTTTGCATTGGCATTTCACAAAGCAGGAGCAAGGAGGTGGTCAGCTAACCTTGCTTGTGTAAAATAGTCTGAAATAGCTTCATATTAACTAGTTCCAAAAGGTACCCACTGGTCTTTTTATGTGTACTTGAGCTACAGAGTTGGTGTCATTCCACACAGCACCAACAACCAACCAACCGCTCACCACCTATCTGCCTACTGACTGCATACAAAACCCAAAACATCCCCACCCATTctcctttttttttgtccatgCAAATATCAAATTAACCATTTTGGAAATACTGCAAAGGCAATATTCAGATTAGTGGCAAAAATGACAAGTAGCCACCATGGTCTCCTTGAAAACAAATGTTTtcattttatgtttttgaatattcCGTTTTTTATTTATGTTTCTATCATTATATGCCATTTTcccctgatttttttttttagagcaAGTAACTTCTGAAAGGCATGTACAATGTTTGGATTTGACTATGAAGGCCAGATGTGTGTTATTTATCATATTTATTATATAGTATAGGCAATACAGTAATTCACTTTCTGTGTACTGTACATAATGTGTGAACATATTTGCAATCATAATTGTCTCTTTTTTGACAGAGCCTTTTGATTTATTGATGTACATTTTATTTGTTGCAAGAGTTTGGCACTCAGAGGACCCATTATCCTTAGTTTATTTTTGATCCGCTAAgaaatgtttgtctttggagtTTTCTCACTTAAAAGATGCTGAAACCATTTAATAAAATGACTGACTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2651049 lncRNA upstream 7567 31548698 ~ 31548913 (+) True G2317877
TU2651046 lncRNA upstream 10081 31546186 ~ 31546399 (+) True G2317874
TU2651042 lncRNA upstream 13424 31542830 ~ 31543056 (+) True G2317870
TU2651041 lncRNA upstream 24517 31531745 ~ 31531963 (+) True G2317869
TU2651040 lncRNA upstream 26541 31529641 ~ 31529939 (+) True G2317868
TU2651065 lncRNA downstream 5498 31584260 ~ 31588161 (+) True G2317893
TU2651824 lncRNA downstream 49013 31627775 ~ 31628006 (+) True G2318573
TU2651834 lncRNA downstream 56142 31634904 ~ 31635122 (+) True G2318583
TU2651837 lncRNA downstream 57964 31636726 ~ 31636981 (+) True G2318586
TU2651848 lncRNA downstream 63136 31641898 ~ 31642169 (+) True G2318597
XM_021560439.2 mRNA upstream 14077 31522258 ~ 31542403 (+) False LOC110488276
XM_021560436.2 mRNA upstream 14077 31522260 ~ 31542403 (+) False LOC110488276
XM_036971861.1 mRNA upstream 14077 31522260 ~ 31542403 (+) False LOC110488276
XM_036971860.1 mRNA upstream 14077 31522929 ~ 31542403 (+) False LOC110488276
XM_036971856.1 mRNA upstream 38696 31497450 ~ 31517784 (+) False LOC110488278
XM_021560447.2 mRNA downstream 245 31579007 ~ 31592755 (+) True LOC110488282
XM_021560449.2 mRNA downstream 14196 31592958 ~ 31598248 (+) False glmp
XM_021560450.2 mRNA downstream 14228 31592990 ~ 31598248 (+) True glmp
XM_036971248.1 mRNA downstream 38357 31617119 ~ 31621139 (+) False LOC118946484
XM_036971247.1 mRNA downstream 38379 31617141 ~ 31621139 (+) False LOC118946484
TU2650902 other upstream 215949 31334819 ~ 31340531 (+) True LOC110488286
TU2650838 other upstream 332918 31222117 ~ 31223562 (+) True G2317685
TU2650704 other upstream 428793 31097619 ~ 31127687 (+) False G2317562
TU2650828 other downstream 38412 31617174 ~ 31621137 (+) True LOC118946484
TU2652044 other downstream 356121 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 356152 31934914 ~ 31941550 (+) False LOC110488305
TU2652047 other downstream 356152 31934914 ~ 31941856 (+) False LOC110488305
TU2652037 other downstream 356201 31934963 ~ 31941550 (+) False LOC110488305

Expression Profile