RNA id: TU2650828


Basic Information

Item Value
RNA id TU2650828
length 2128
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC118946484
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 31617119 ~ 31621139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATTAGCGTTTCCAACATGACTCAAAATGGCGGTGCACTTCTCCACTAAACGGCTATTCAAGGACTGAACGAAAACAACAAAATCACACTAAGTCTTTGTGAGACATCTGTTAAGGTTTCAGCCATTTTGGACCATAGAGAATAATTCCACGATGACAAGCTTCAGGCCTTGGTTGTAATTGTGGCACACACCACACGCACCTGCATGGGGAGGATGGAGAGCGATTGCAGGATCCCCATGTCGTGTTTGAGGCCCAGAATCCTGGCCTTGCATGCACTCTTCTGGGTTTTGGTGTCTCTCAGAGTGTTTGGTGCAGCTCTGCTGAGTGAGGAGAAGACCACAGGTGCTATACTTTTTTATCAGTATTTGATAAGAATGAGTTGGAGAACATGAGTACAGGATTGATGTGGTGCTGCAAACATAAATGCCAGTGACTGCTCATACATCGTTTGTATAGCAAGTTAGCAACACAGTTCACAGAGAAGcacatgtttgtgtgtggggcTGATAAACTGGAGCTTCTACTTCACCCGTGTCAGGGGTATAAACAAAAGTGTCACTGGTCATGTCATTCAGCATAATTTCTGTCAAAACTATTCTCAGTCCTTTTCAGATACTGATTCAAGGCATTGTGTTTCGCCTGTGTTTTAGTGGCCAGGCCGGTAACCACCCCCTGTTGGCAGATGGAGGAGTTTGTGGTTGCAGTGGAATGCTCCCGGTGCAACACTTTACAGTCGAAGTCGTGGGCAGCATGTATTCAGACGGGATACGCGGAGAGGATCAACTGCACCAAGTCTAATAAAGATGAGTACAAGAGCTGCCGCTCTACCCTGATGGAGGAACACCTTTTCTGGAAGTTTGAAGGAGCCACGTTGGGCCTCACCATACTATTTGCGCTCATAGTGGTCGCTAGGCAACGTTCGCTGGACCGGCTTGCCTCCGAGAAAGTCCGCAGGCAGATCGAGTCCATCTAGCGCAGTACACCAGAGTGAAGAGACTAGTAGAACTCACCATGGTGGCTCATCTCAACATTTCAAACTGTTAAGAATTACCACAGCCGCTCCATTTCAACAGCATGGGGGCCTGGAGAACGTAATGTTCAATGGACCAGACTTAGTAGAAAACTGTTtcccttttttggggggggggggggggggggggggggttgttgaagAAATTAGGCCTGACAGTAACAAGCTTATAAAATCAAGATTGACAGTGAAACTCCAGCTCTAATTTTAACCCGCCAAAGCACAAATGGTGAACAGTGTCTGGCGTTTTGTCAATGGAATGAATAACCCTAAAGGGAATGGCTCTTCTGAGCAGGCAACTTGCAGTACTTTGATCTGGACAAAGTGATGAACGGGAACTGACTGCATTCTAAGTAGCAGTTCAAGCCACATACATTTCTTTGACATCTTTTGGGGTGGACTGAAACCTGTGTGAAACCTGTGTTGAATATACAGAATTGTCTGACAAATGCCAGAGACGTTTCTGGCACATGTTTCTGTTCTCTGAGAGAACCAATAATCTCATCTAGTGTCAAATGCCCTGTCTGACTTGGAAACATGGCCAAATAACTAGCTCTGTGACTCAAGTGGATCTAGAATCTGTCTTATAGGGGGATGAGTGTTGCAGTGTTACTGTGTACTGTTGTATGAGTTTCATGCTGCAGTGCTGTTTTTCACCTCCATGGGATTCATATTTCCAAGATTCAGTATTGGTGTTCTGCCAAAAGTCTATAATCACTAGGTTGTGAAAGGTGAAATCTTGTGTGTTTGGAGATTCCAGGCATGGTTCTAAACACAAACACTGACATTTGACTACTTTTTCATAAGAGTATAGCGTTAtccaatacacacaaacacactgcacaTATTTCTTTCTGTTTTCATTCATTTAAAAACTTAGTTGCATTTCCGCTGATGGAGACTCACTTTTTTCGACTCCCCTAGTAGGCTCCTAGTAACATTGGTCTCTGAGCTCAGTGATTGCCAGTATTTTATCATGGTTTTACATTTCaactgtaaataatgtatttttaggAATTATGTGACGTGTTTTCCAGCCTCAGCAGCTCTCAAAGAGTTGAGAATTCTGCAAGAATAAATGGAAAATCGGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2651065 lncRNA upstream 29013 31584260 ~ 31588161 (+) True G2317893
TU2651049 lncRNA upstream 68261 31548698 ~ 31548913 (+) True G2317877
TU2651046 lncRNA upstream 70775 31546186 ~ 31546399 (+) True G2317874
TU2651042 lncRNA upstream 74118 31542830 ~ 31543056 (+) True G2317870
TU2651041 lncRNA upstream 85211 31531745 ~ 31531963 (+) True G2317869
TU2651824 lncRNA downstream 6638 31627775 ~ 31628006 (+) True G2318573
TU2651834 lncRNA downstream 13767 31634904 ~ 31635122 (+) True G2318583
TU2651837 lncRNA downstream 15589 31636726 ~ 31636981 (+) True G2318586
TU2651848 lncRNA downstream 20761 31641898 ~ 31642169 (+) True G2318597
TU2651858 lncRNA downstream 28716 31649853 ~ 31650084 (+) True G2318607
XM_021560449.2 mRNA upstream 18926 31592958 ~ 31598248 (+) False glmp
XM_021560450.2 mRNA upstream 18926 31592990 ~ 31598248 (+) True glmp
XM_021560447.2 mRNA upstream 24419 31579007 ~ 31592755 (+) True LOC110488282
XM_021560448.2 mRNA upstream 38412 31556480 ~ 31578762 (+) False LOC110488283
XM_036971463.1 mRNA upstream 38412 31556481 ~ 31578762 (+) True LOC110488283
XM_021560455.2 mRNA downstream 79513 31700650 ~ 31711516 (+) True LOC110488287
XM_021560467.2 mRNA downstream 193690 31814827 ~ 31826946 (+) False LOC110488296
XM_021560470.2 mRNA downstream 193690 31814827 ~ 31826946 (+) False LOC110488296
XM_036971225.1 mRNA downstream 193690 31814827 ~ 31826946 (+) False LOC110488296
XM_036971227.1 mRNA downstream 193705 31814842 ~ 31826946 (+) True LOC110488296
TU2650902 other upstream 276643 31334819 ~ 31340531 (+) True LOC110488286
TU2650838 other upstream 393612 31222117 ~ 31223562 (+) True G2317685
TU2650704 other upstream 489487 31097619 ~ 31127687 (+) False G2317562
TU2650705 other upstream 489487 31097619 ~ 31127687 (+) False G2317562
TU2650702 other upstream 489487 31121088 ~ 31127687 (+) True G2317562
TU2652044 other downstream 313746 31934883 ~ 31941550 (+) False LOC110488305
TU2652039 other downstream 313777 31934914 ~ 31941550 (+) False LOC110488305
TU2652047 other downstream 313777 31934914 ~ 31941856 (+) False LOC110488305
TU2652037 other downstream 313826 31934963 ~ 31941550 (+) False LOC110488305
TU2652038 other downstream 313826 31934963 ~ 31941856 (+) False LOC110488305

Expression Profile