RNA id: XM_036971696.1


Basic Information

Item Value
RNA id XM_036971696.1
length 6667
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110488308
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32220923 ~ 32353844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCGCGCGCCTGGGTAGATCTCCGCCTGTTTCAGTGTATAGTCAATGCAAACTCAACAGCGTGCGTCTTGGGAATTACGACGTTCTAGGAGTGAAATAGTGATTATTTTCAGACTGTTACCTTTTCGTCAATACACTTGCTGAATTTTGGACTATTTCCCTCGGAAATATCTCGCGGAATTTATTTTGGAGATAAGGTAATCAGTCAGTTGGAAGGAAGAATTCAGCCCATACCTCTTAAATTCAGAACCCTTCAGAATCCTGTTCTGTCCTCTGATTTGGGATTCCTACTGGATGTTCACTCTGTACCGAGTGGCTCATCGAATCCCACTGCCGTTGTTGGACGATTCAGAAGCTGAGGACCTTGCTGAGGACCACTCTGCGGGGGtccacccccacctccctctcttcttcctgaACCATTGTGAACTTCAACGATAGTGACTGATTGGACACTGCATCTGCCAGTCTCAGCTGATTCTAGACTACAGGGCCCCCGTGGATCTGAGCCACACACCATGACTTGCTAAAGCCCCACTTGCTGCTACCCACCCCCCTTCTCCTCATTGAAGATGGTCCCTCTGGAACGGACGAGGTGGCGCCTCCTGCTGGCAGCCCTCACACTCACTTCCTGTCTACTGTCCACCTCAGCCACAGCCCCGCCCTTCCCAAAAGACCTGGAGCCAATCAACGTTGTCCGATGGGAGCaCTCCTACCTGTACCCAGGGTTCCAGGGGCTGGTGTCGGACAACGACACAATCAGACTAGGCCTGGACTTCCAGAGGATGCTGAGGATCAACCACATGCTCTACATCGCTGCCAGGGATCATGTTTTTGCAGTAAACCTGACCACAGCTGGTGACGACTTCGTCCCCCAGCTGAAGCTGACATGGAGGTCCAAGGATGTGGCCAAGTGTACCGTGAGAGGTAGAAACAGCGATGAATGCTACAACTATGTCAAAGTGCTGGTACCGCGGAACGACGAGACCCTATTTGCTTGCGGCACTAATGCCTTCAACCCCACCTGCCGTAACTACAAGATGACCACCCTGGAGCAGGTTGGCGAAGAGGTGGTGGGTCAGGCGCGCTGTCCCTTCGAGTCGGGTCAATCCAACCTCGGCCTCTTTGCTGGCGGTGATTTCTACTCTGCCACCATGACCGACTTCCTGGCCAGCGACGCTGTCATCTATCGTAGTCTTGGCGACGACAGCCCCGTCCTGCGAACCGTCAAGTACGACTCCAAGTGGCTCCGAGAGCCCCATTTCCACCATGCGATCGAGTATGGAAATTATGTCTACTTTTTCCTCAGTGAGATTGCAGTGGAGTACACCACACTGGGCAAGGTGGTGTTCTCTCGTGTGGCGCGGGTGTGTAAGAACGACAATGGCGGCTCTCCTCGGGTGCTAGAGCGCTACTGGACCTCCTTCCTGAAGGCGCGGCTCAACTGCTCGGTGCCCGGCGACTCGTTCTTTTACTTCGACGTGCTGCAGTCGCTCACCAACGTGCTACAGATCAACCAGCGCCCCGCGGTGGTGGGAGTGTTTACTACGCAAGCTAACAGTATCCCTGGCTCAGCAGTGTGTGCCTTCTACATGGATGACATAGAGAAGGCCTTTAATGGGAAGTTTAAGGAGCAGAaaaccagtgactcagcctgGACCCCAGTACCAGAGGAACAGGTGCCCAAGCCTAGACCTGGTTCCTGTGCCGGTGACGGCCTGGCCTCTGCCTACAAGTCGTCCACCACCTTCCCCGACGACACGTTGACCTTCATCAAGTCTTACCCTCTGATGGACGAGGCGGTGCCCTCCGTCAACGACCGGCCCTGCTTCACCCGCACCACCAGCAGGTACAAGCTGACTCAGATTGCGGTGGACACCTCTGCCGGGCCGTCTAAAGACCGCACTGTGGTCTTCCTGGGCTCGGAGGATGGCAGGGTCCTGAAGGTGTTGTCCAGCACTCATCCTAACGCCTCCTTTGGCTCCCAGCTCCTGGAGGACATAGATGTGTATAACCCCTCAATGTGTAACATTCAGGGGCAGGAGGACCGGAGGATTCTGGGAATGGAGCTGGATAAGGACCATCATGCCTTGTTCGTGGCCTTCACCAGCTGTGTCATCAGAGTACCACTCAGCCGCTGCACTGAGCACGGCGCCTGTAAAAAGAGTTGTCTGTCATCCCGCGACCCGTACTGCATCTGGCTCCGGACCGGGAGCTGTGCCAACATGGCGCCAGGGTTCAAGGCTGGCTTTGAGCAGGATATCGAGGGAGACCACTCGCTGTACCCTGAGAACTGCCTTGCAGATGTTCTGGCGACCAAGCGAAACCAGAACCCCGCGGCAGACTCAGCCTACGGTGTCCGAAGGCTCCCTGACATGGAGAAGTCCAGCCCCAGCGTCCACTACACCCTCCTGATCGCCTGCGTCCTGGTTGCCTTTTTCCTCGGTGCCATCCTCTCCGGCTTCCTGGTGTCATGCTACTGCAGTCACAATGCCCGCCGTGCCCACCGGCTTGGCAAGGACCCTGAGGCATCCCTCCACCCCGCCCTCTCGCTGCGCAGCCTGGCCAAGCTAAATGGCCTGCTGGACGGCCAGCCGAAAGAGGAGAAGCTGGATGTGTCTACGCCCAAGATGTACAGCTCCTTCGTTCCCAACGGAAAGGAGCACACTCCGGGCAGGCACGGGATGTCCCTGGGAGACCCTGACCTTAACCTCTCCCAGGGGGAGAACCTCTCGGGCCTACCCACCCCTGACTCCACCCCGGAGCTGCCGATCAAGAACATGAAGGCCTTCCGGAACCAGTGGGAGAGGAACCAGAACTGCAACAACGCAAAGGAGTCTAAGGCACCGCCTGGCACCGGTTTCGGCCTGGGTTCGTCGAGATCCAGCTCGGGGGTCACCCAGCAGGTGTTCCCCTTCTCCCACAGCCTGACCAATGGCCAAGCCCTCGGGCACCTGCCCGAGGAGAGGAAGATCCCCAACGACGAGCGTGCAAAGGGGGCTTCGGCCTCCCAGTCCTCCTCCTGCTACCCGCAGACGGTTGTGGATGTGGCGGCCCTGGACGAGCTCCTCAAGCACATCCACGAGGTCAGCGCCTCAGGCAGCCACAGCATCACTGTGCTGACCTCACCGTGTGCTCCCCTGCCGGGTAGCTCCAGCTCCAGCCATAACCACAGTCACAGCCAGAGCAGCTTCAGATCCCAGCCCCAGATCCCCGAGACTGAGTCGGCCCAGTACTACAGCTCCTCCACCCTGCCCAGGGACAGTCTGACCCGCCGCCTGGACGTGCCCCCAGACGCTGCTGCCGCCTCCCCGCTGCAGCAGCAGTCCATCCCCGAGCGGAGCTCAGTGACTCGCCACCACTCCCAGAGGCATTTAATGATCAAGATGGGCAACGGAGGGGCCGTCCCGCGCCAGCACAGCTTCAGACAGGGCGGGGTTGGGCCACCACCCCACCAGCTGCTCACCCGGATCAActctggaggtggtggtggtagcggCGGGGGAGGGGTTGGCTTTGAAGCCCACCGGCCACTCATCCCCAGTGCCTGCCTGACACGGCAGCACAGCTACAGCGAACCGCCCCACCTCCACCGCGCCGCCATTGTACGCCGCACTGCCTCCCTCAAGCCCCAGGTACCCCCCAAGCCCCTCTTCCTGCCCGCCACTTCGCCCGTAAACGAGCAAGGCAATTACAACTACTGAGAGCTTGGAGTCGGACTGAGAGGCCCCAAAACGACAGACAATGTAACCTCGCTCCTCTCAGAGTTAGGGCAACTCCCatgtgacgggggggggggggttaagtggGGTTCGAGAGGGCAACAACCGGGACTGGCATATCTTTTGACGAGACGGCCGACAATAGCCTCCACACCTGATGAATGTCCTTATACCATATTGGTATTATTGCAATGCTACTTGATCACAGGACAGTGATGGATTAACAGCATATAGAACATGTGGTAGTATTGAATTGACTTGGAGGATCTGTACCCTCGTTTGAGGCCAAAGAATAGAGTAACAGGGGCCCAAAACTCAATGTAAAGGACAGATCGCCAGTCGGCCACCAAAGCTGTGAACAATGCCTGCTTTAGCTTGGACCCAAGGCCACAACTTAAGAGAGCACCTCACAACACAAACAGTGCTCATCCTGCCTGtaatgtatgtatactgtatgcgtgtgtgtatacatgtataTGCACTTCATGTTAAGATACCAGAGGGCAGAACCATGAAGCAGCTACATTAACTGTGGTGAGATGGTCAACTCCTAGCCATTTCTTAACCCTCTTATGACAGAGATACCATGGAGGCGCCACTCAGTACACACATTCGGTATATACATCCCTCGACGAGGGATTTAGCAATAACTTACCGTTGTGCAGTTAAGTATCAACTGTACCCCTTGATATAAGGGTAAGTATTATACCTCTTGCAGCATACCATAAGAAATGACCACTTTGATAATGCTTGGAAAATTATTAATTCTGTATTAGTGGAATGATGCTGAGGAACGAGACACATGGCGTCAGTATAGACCCATCATGCATCATAGCGTTACTATTATGTTTGTCCCTGGTGGATGGGGGCTCCGCTAGCCTGTGACAGAAGGCCGCCTCGGGGCCTGATGAGTTAGGAGAATCCTTGCCCTGCATTTGGAATTCTTACTTTTTGGACATAAATGCTACGATAACTCCAGAGGAATTTAACAAGCCCCCAATATGACTGTCATTGTCATTCAAGAAGAGGATGCAGTACACTGCAACCCCAAAAACAATTTGTTTCATCCTTAACACTTAGTGAGAATTGGTTCCACATTGAGGTGCAATCATTCAGGCTATGTATTATATTAGCATtataaaattatatttaaaaagtCAAGTCTTAAAGCGGAGCCCCAAGAAATCACTCATGGGCACATAGCGCCCTCTTATGGACAAGCCCTTAATAACTGTGTAATAAAGTCAGTAATTATGTTTACCATATTGCTATTAACATTGTGGATGTTGTTGTAAATAAAGGCATCTGTGGAATAATACTAGCCAAACTTTGATTTGTATGTGTTAATGTGTGCCTTATTTAATAATGTGGTGTGGAAAAGGGAAAAAAGTATTGTTTTTGTCTCCATCGTTCTGTTGTCATTACAAATTCATTTCAAATCTGTCCTCCTGCACGGACTCCATTATCAGAGGTTCTATTTCTACTGACAGCTGTTTTAAAAAATTGCAttcgtcttttttttttttttcatgaattTTAAGCttctttatatactgtatatttaatgACAAAGGAGCTAGGTTGGAAAAGATGAGTAGATCTGAAAGTATATCAGCAATGTTAGGTCTGTGTCATGTTTTTTGAAAGAGCTCTCAAATATGTTTGAAATGGTATGGACATAGGCTGAGGCATTAACTCTGCTTTACAAAGAAATTGTATTTAAtaagggctctattcagtctAAAGCTGAAGCATTACAGATTCCGATAGAATTGTTAAGGTCATTTCCCATTGAGCCGACATACGCAGCGCGAATGCAGTGTCTGCTAAAGCGGGAATATTGcatttaaatttcaatcacgctgtaaagcAGGATTTTCGCACTGCGGATTAAATATAGCCCCAAGTGTGGGGCGAAAGAGGCTAGCTGAGGGACTTGCAAATGAAAATGCTGCAAGAAGGGCTGGATGGTTGATGATTGCCTGGTCCAACAAGTATGCTATTCAAATGAAGCTCAGGATTGTAGGACATAAAGTAGGTGTCTGAAGATGCCTGAAGTGATGCCTACAGTGAGCTAACAGTGCCCATAGGTTTAGTTATTTCTTTGCTATTACTGTAAAGGGAAAATTCCAAccaaaaactatcttttggtatttgtttcattagtctatTGTCGATCTAgtccccaaaatgttttgcatgtcagcaatcaagttcaTACGgctgtatttctgtgtttttaaAGTTATAGATTAACTTGATTGCtgacagtcccaaaatgtttgcaTATGTCAACAATGGACAAATGAAACGAATACCAAAAGCTAGTTTTGGGGTAGAATTTTCCTTTAAATAGAGAAATAGCAcctgcagcgtgtgtgtgtgcaaggaACCAAGACTTTGTTTTACGTTGAGGTTAACAAGTGAGTTGATTGAGTGTGTGAACTGGCACCTTCTCTGCCTCAAGTTGAACAGAAATATCAAATAATTCAATGCTAATGTCAATTGCAAGACACGTCATGAAATGCCTACAACACTAAAACCACGTTATCTATATCCCCTCATCTGGCCACTTTGACAGAAAAAAAGTTGAGTTGGGTGCTAGAATAGATTCATGTAAACTGGTTACGTTTGAGTACTGTATGCCAATATTGAGTTTATATGCAATGTTTGCGTTTTCAATTGCTATAAAAATCCCTTCAGAAGAATGCTCTCTGACATacatctaaaatgtatttcatttgaCATCTTATTAATGTATCATACCCCTCACTCACTTGACCAATGAGGTTTACTCTTTTTGTAAATATAGCAAACCAGCAGTCACTTGCATCTCCATGgtgatttcatttatttttacaaGTGGACTTCGCCCCAGATGCTCCTAAATTCTATTAAACAGAGCTGTATGTCCGCTACAATTAAAGATATCTAATAAAAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2652425 lncRNA upstream 128541 32092129 ~ 32092383 (+) True G2319106
TU2652153 lncRNA upstream 179098 32039690 ~ 32041826 (+) True G2318851
TU2652057 lncRNA upstream 232187 31934963 ~ 31988737 (+) False LOC110488305
TU2652685 lncRNA downstream 3580 32357424 ~ 32357916 (+) True G2319356
TU2652695 lncRNA downstream 19881 32373725 ~ 32379575 (+) False LOC110488310
TU2652698 lncRNA downstream 23311 32377155 ~ 32377575 (+) True LOC110488310
TU2652701 lncRNA downstream 27836 32381680 ~ 32382325 (+) True G2319371
TU2652704 lncRNA downstream 34694 32388538 ~ 32388739 (+) True G2319374
XM_021560481.2 mRNA upstream 252528 31955665 ~ 31968396 (+) False LOC110488302
XM_021562155.2 mRNA downstream 12730 32366574 ~ 32369065 (+) False LOC110489447
XM_021562152.2 mRNA downstream 12730 32366574 ~ 32369564 (+) True LOC110489447
XR_005041401.1 mRNA downstream 17962 32371806 ~ 32372537 (+) True LOC118946529
XM_036971003.1 mRNA downstream 18710 32372554 ~ 32376549 (+) True LOC118946466
XM_036971004.1 mRNA downstream 23211 32377055 ~ 32388367 (+) False LOC110488310
TU2652081 other upstream 266411 31953622 ~ 31954513 (+) True G2318792
TU2652040 other upstream 279010 31934963 ~ 31941914 (+) False LOC110488305
TU2652038 other upstream 279068 31934963 ~ 31941856 (+) False LOC110488305
TU2653370 other downstream 588359 32942203 ~ 32943392 (+) True G2319921
TU2653501 other downstream 815619 33169463 ~ 33170117 (+) True LOC110487593
TU2653625 other downstream 1097315 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 1983266 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 2495334 34849178 ~ 34850391 (+) True G2321656

Expression Profile