RNA id: XR_005041401.1


Basic Information

Item Value
RNA id XR_005041401.1
length 325
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118946529
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 32371806 ~ 32372537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgttgtCTTTTTCCGTTTTGCAGGGTTCGCGATCGTCGGGAGGTGGACAGTGACTTCGAAGAGGAATCAAATGTACTGGATGAGGTCCAGTTGGATGTGCCACTGCTGCCAGTCATCCTTGATGTCCAGGATGCTGCTATCATCCTTGAGGATGTGCCAGATGTACCGACTATCCTTGAGGAGGCCACTGGTAATTGGCATTTGATACCGATTAGGTTCAGCCCCCTGTACTGTGGGCCTGTTGTGATCAGAACCCATGCCGGTCCGGTGGCTAAAGCTTGGAGAACTTTCCAGTTCATCAGCCCCATTATCACCTATATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2652685 lncRNA upstream 13890 32357424 ~ 32357916 (+) True G2319356
TU2652612 lncRNA upstream 17985 32352975 ~ 32353821 (+) True LOC110488308
TU2652425 lncRNA upstream 279423 32092129 ~ 32092383 (+) True G2319106
TU2652153 lncRNA upstream 329980 32039690 ~ 32041826 (+) True G2318851
TU2652059 lncRNA upstream 419307 31946646 ~ 31952499 (+) True G2318776
TU2652695 lncRNA downstream 1188 32373725 ~ 32379575 (+) False LOC110488310
TU2652698 lncRNA downstream 4618 32377155 ~ 32377575 (+) True LOC110488310
TU2652701 lncRNA downstream 9143 32381680 ~ 32382325 (+) True G2319371
TU2652704 lncRNA downstream 16001 32388538 ~ 32388739 (+) True G2319374
TU2652721 lncRNA downstream 19931 32392468 ~ 32392842 (+) True G2319381
XM_021562152.2 mRNA upstream 2242 32366574 ~ 32369564 (+) True LOC110489447
XM_021562155.2 mRNA upstream 2741 32366574 ~ 32369065 (+) False LOC110489447
XM_036971698.1 mRNA upstream 17962 32220923 ~ 32353844 (+) False LOC110488308
XM_036971695.1 mRNA upstream 17962 32220924 ~ 32353844 (+) False LOC110488308
XM_036971696.1 mRNA upstream 17962 32220924 ~ 32353844 (+) False LOC110488308
XM_036971003.1 mRNA downstream 17 32372554 ~ 32376549 (+) True LOC118946466
XM_036971004.1 mRNA downstream 4518 32377055 ~ 32388367 (+) False LOC110488310
XR_005041295.1 mRNA downstream 22527 32395064 ~ 32398502 (+) True LOC118946461
XM_021560512.2 mRNA downstream 81370 32453907 ~ 32459072 (+) False LOC110488315
XR_005041389.1 mRNA downstream 236748 32609285 ~ 32614184 (+) False LOC110488320
TU2652081 other upstream 417293 31953622 ~ 31954513 (+) True G2318792
TU2652040 other upstream 429892 31934963 ~ 31941914 (+) False LOC110488305
TU2652038 other upstream 429950 31934963 ~ 31941856 (+) False LOC110488305
TU2653370 other downstream 569666 32942203 ~ 32943392 (+) True G2319921
TU2653501 other downstream 796926 33169463 ~ 33170117 (+) True LOC110487593
TU2653625 other downstream 1078622 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 1964573 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 2476641 34849178 ~ 34850391 (+) True G2321656

Expression Profile