RNA id: XM_036971006.1


Basic Information

Item Value
RNA id XM_036971006.1
length 3063
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110487593
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33166851 ~ 33175323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGCATGAGAGCTATGACGAAATGATGAAAATGATCATCTCAATGTTCAGACTGGACAAATACAGGCCAAGGAAAGACACCAACAATGATGTGAGCTTTGAGTCTCACATTTACTTTGATGATGCTTTTAAAGACGTGAAAGGTAGTAAAGGCCGGCATGTGAACGAATACGCAGAGGACCTGGTGGAGGTTATCCGAGAGGTTTACAATATCTTCAATGAGAAGGATTCATGCATCTTCAGAGAGAGCCCACCCCTTCCATGCCAGAGTATCCTGCACACCCCTTACGGAGGTCGACTGGAGTATATCCTCCCTAATGGCAACCTGCTGATGGTGCACTTTAAGGACAAGCTACTGATCCGCCACAAGAAGAGATGGTCTCAGATTATGTACTTGTACTACATTCTCGGCTGGCGACTCACCAGGAAGTATTTCAAGAAGTTTGAGCAGGGTGGAGATGAGAGCGAGCTGAGGGAAAAGATGATGAAAGAGAAGGACAATACCTATCTCCTGGCTTTGGATGGGGACACCGACTTCCAGCCCTATGCTGTAATGCTCCTAATAGATCGGCTGAAACTTTATCCACGTGTGGGTGCGGCATGTGGGAGGATTCACCCGACAGGCACAGGTCCTATGGTATGGTATCAGAAGTTTGAGTATGCGGTGGGCCACTGGCTTCAGAAGACTGCAGAGCACGTGTTTGGTAGCGTGCTCTGCAGCCCCGGCTGCTTCAGTCTGTTCAGGGGCACAGCCCTCATGGACGACAACGTCATGAAGAGATACACCACTAAGGCCACGGAGGCTAGCCACTACGTACAGTACGATCAAGGTGAAGACCGCTGGCTGTGCACTCTCCTGCTGCAGCAGGGCTGGAGGGTGGAGTACAACGCTGCGTCCGACGCCTACACCAACGCCCCCCAGGACTTCAAGGAGTTCTATAACCAGCGTCGGCGCTGGGGGCCCTCCACCATGGCCAACACCATCGATCTACTGGGCTCAGGGTCTCTGACCTCCCAGAGGAACAGCTCCATCTCCAAACCCTTCATCCTCTACCAGATTCTCAGCATGGCCGCCTCCATCCTAGGCCCGGCCACAATCTGCCTAATGATCTCAGgAAGCTTGTCGTTCATACTAGACATCGATCCCAACGTTGCTTTGGTCCTTGCAACAGTGCCCCCTGTGGTGTACCTGTTGCTGTGCTTCAAGCTGAAATCGGACACACAGATCGCCATAGCAGCCGTCATGAGTGTCTTGTACGCTTTCCTCATGATAGGAACCGCTTTGTCCATCATAGGTGCTATGGTTGAGCAGCAAACCATTTGGACTCCTAGCGGCCTGTTTATCATAGGCCTGGTGCTGATGAACATCATCACAGCAGCGCTCCACCCCAAGGAGTTCCATCTGGTCATCTACGGCCTCCTGTACTTCATCTCTATCCCCAGTGGCTACCTCCTGCTGACCATCTACTCCATGGTCAACATGAACAATGTGTCCTGGGGCACTCGGGAGACAGGTGTCCATGTCGCTGCTCCACCACCAGCCAAGGCCATCACACAGCGCATCCTACAGGCCAAGTGCTGCAAGTTTCTCTGCTGGGACAGTGGAAAAGTGGCAGACCAGAATGGTCAGTTGCCAGAAACAGTTGTGTTGGCTAATGAGCCAAAGGTGAACCCTAATCTGACCTCTCAGGACAATAACAGGAATGTGGAATTATGTTCTCATCAGTCTACTGAACAAAACTTTGTAACACAACTGCAGAAGAAGTCCTATGACTTCCCTCTAAATGAAGATTTTCTTGTGAAGGAAGAGGAGGACTTTTGGAGAGAGCTCCAGAAGCTCTATTTGGAACCTCTGGCTGAAGATAAAGAAAAACAGAAGAAAATCACAAATGACCTAAAGGAACTGAGAAACAAGGTGACTTTTATCTTTTTCATCTGCAATGCCATGTGGCTGGTGGCAACGTTCACTCTTCAGGCCATTGGAACCTCAGTCACTATCAAAATCCCAAAATCCAATCTCAATCTGACTCAGACTAGGGAGTATCTATTTATCGATCCAGTAGGACTGATGTTCCTTTTGGGATTTGCATCCTTACTGCTGATCCAGTTCTTTGCCATGTTCTACCACAGAATTTACACTCTGATCCATTTCGTGGCATTTGCGAACACGGAGTCCAAGACTGAGAAAAGACAATCAGACGATGGCATGCAGATTCCTGACATGCTGGAGATAGAGCTCAAAGACGACAAATACTTTGACACATTTCTGTCTATAGAGAATCCAGCAGCAATCCAGCAACAAGGCCAAGAAACCCCAGTGTGAGGTGTCCCTTAGTGGCAAGCAGTTGCAGCTAAAATAGTAGTAGGAGTCGGATACTGCAGTTTTGCGTTAGATGTTGCACAGTTAGATATAGTGGTATTGAGGGAGAATGTTCCAAATAGTATAGATTATAGAGAGTATTTATTGGATTTGATAGagttaacctttgtttaaccagaaAAAGACCCGTGATGAACCTCTTTTGCGAGGGCAGTGTGAACATACAATACAAGAGCAAAGACGGggacaaaacattaaaaacaattGCAGCGATCAACAACATGTATTATAGCATAACGGAGTATAACAATTGAATGGGAGTTAAATCTCAGGGAAATGTGATATGTGCTATTTCATGTGTGATCAATTGTTGTAGCTTGTAATCTTTGTTTGCTCCTTGTGTGCTTTCCCTTTTTTTAATCAAATGCTTTGTTGTGAATCACTTCCTATTAGTATTTTGGTTAGCAGTTATACTTTTCCCTTTTGAGTGAAGCACTTTATCTGTATATTGCACTAATATATTGAGATTTTTTAGTGGAGTTATGTGTGCTATGTATTTATTATGTAACTGAATAGAATGTATAATTacagtatttttttgttattaaagtaggcaagacagttaagaacaaattcttatttataatttATAAGCCCTCTCTACCGATAACATTGTGCTTTGTTTCATTCTGGTATCTGTATGCTAATCCATGCGTAATACaactatatacatactgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653479 lncRNA upstream 23682 33142894 ~ 33143169 (+) True G2320023
TU2653478 lncRNA upstream 23965 33142585 ~ 33142886 (+) True G2320022
TU2653477 lncRNA upstream 26239 33140182 ~ 33140612 (+) True G2320021
TU2653475 lncRNA upstream 34092 33132399 ~ 33132759 (+) True G2320019
TU2653474 lncRNA upstream 34877 33131706 ~ 33131974 (+) True G2320018
TU2653522 lncRNA downstream 48982 33224305 ~ 33224508 (+) True G2320064
TU2653627 lncRNA downstream 280168 33455491 ~ 33455772 (+) True G2320162
TU2653628 lncRNA downstream 280571 33455894 ~ 33456189 (+) True G2320163
TU2653629 lncRNA downstream 281466 33456789 ~ 33456990 (+) True G2320164
TU2653630 lncRNA downstream 284437 33459760 ~ 33459991 (+) True G2320165
XM_036971005.1 mRNA upstream 126 33165519 ~ 33166725 (+) True LOC118946467
XM_021560552.2 mRNA upstream 49849 33107620 ~ 33117002 (+) False LOC110488341
XM_036971065.1 mRNA upstream 49849 33107851 ~ 33117002 (+) True LOC110488341
XM_021560551.2 mRNA upstream 84655 33073339 ~ 33082196 (+) True LOC110488340
XM_021560550.2 mRNA upstream 103002 33061342 ~ 33063849 (+) True LOC110488339
XM_036971710.1 mRNA downstream 5047 33180370 ~ 33213019 (+) False LOC110488342
XM_036971700.1 mRNA downstream 5324 33180647 ~ 33213019 (+) False LOC110488342
XM_036971701.1 mRNA downstream 5324 33180647 ~ 33213019 (+) False LOC110488342
XM_036971702.1 mRNA downstream 5324 33180647 ~ 33213019 (+) False LOC110488342
XM_036971703.1 mRNA downstream 5324 33180647 ~ 33213019 (+) False LOC110488342
TU2653370 other upstream 223459 32942203 ~ 32943392 (+) True G2319921
TU2652081 other upstream 1212338 31953622 ~ 31954513 (+) True G2318792
TU2652040 other upstream 1224937 31934963 ~ 31941914 (+) False LOC110488305
TU2653625 other downstream 275836 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 1161787 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 1673855 34849178 ~ 34850391 (+) True G2321656
TU2655502 other downstream 1794898 34970221 ~ 34970626 (+) True LOC110489302
TU2655559 other downstream 2097816 35273139 ~ 35277663 (+) True LOC110487604

Expression Profile