RNA id: XM_021560568.2


Basic Information

Item Value
RNA id XM_021560568.2
length 1808
RNA type mRNA
GC content 0.44
exon number 6
gene id psmb8a
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33357434 ~ 33360834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGTGTGATACGTTTTCAGTCAGTTTACTGTATATTGTTGTGAAAAATCACGTCAAATCTTAATAACTATTCACAGTTGTTTATCCGTATGATTAGGGGTGGTTAGGCTATTGTCAAATAATACTCGGAATGAGTACGCATATTATAAGCAACAGTTGGGTTACTTTTTCGATTAGGAATGAAAATTTATATTAAAAACCCTTTCGGTTTCGTTTGGATTCGGAAATATATTTCCTTGACGCGTCAGAGCGAAGTCAAGCTGTATTTTCGCTTTCAAATTTTATTAAGATACAGTACATTCTTATATTTGATTTAATCATTATGGCACTTTTCGACGTAAGTGGTTATAAATCGCACGCGGGACTTCGTGGGCAGATTCTTGGAACAGGAGTAGGGCATCTTGTTGACCGACCGAATCAGGAATTTGCTGTCCCAGTTGGAGTGGATCCTTCAGGGTTCCTGAAGTCATGCAGCCGTGAAGGTGGGGTGTCCATTGATCTGAATCACGGAACAACTACACTGGCTTTCAAATTTCGCCATGGCGTCATTGTGGCTGTGGACTCCAGGGCCTCAGCTGGCAGCTACATTGCGTCGAAGGAGGCTAACAAGGTGATAGAGATCAACCCTTACCTGCTGGGGACCATGTCTGGCAGTGCTGCTGACTGCCAGTACTGGGAGAGACTGCTGGCTAAGGAGTGCAGGCTGTACAAACTGAGGAACAAGCAGAGGATCTCAGTGTCTGCAGCCTCTAAGCTGCTGTGTAACATGATGCTGGGATACAGAGGCATGGGCCTCTCCATGGGCAGCATGATCGTTGGCTGGGACAACAAGGGCCCTGGTTTGTACTACGTGGATGATAACGCCACACGTCTCTCTGGTCGTATGTTCTCTACTGGTTGTGGTAGCAGCTATGCGTACGGAGTGATGGACAGCGGCTACCACGAGGACATGACGGTAGAGGAGGCGTACGAGCTGGGCCGCCGTGGCATCACCCACGCCACGCACAGAGACGCCTACTCTGGAGGAGTGGTCAACCTGTACCACATGCAGGAGGACGGCTGGATAAAGGTGTGTAAGGAGGACGTATCAGAACTGATCCACCGCTATAGGAAGGGCATGTTCTGATCCCAGATCAGTTtctacacccacacagacacactgtgttCTCTATCAACTGATCCCAGCACTGCTCCAAATAAAGACCGTTTTCAAACTGCATCCTCTGGATTGTTTAACCTGAAGGTCTTACATGCAGTCACAACTTGCTGCAACTGTTACCATTCCTATTCAAATGTACAGTATGATAATCTACCAGTTATGTACCAGTCCTATTCAAATGTACAGTATGATAATCTACTAGTTATGTACCAGTCCCAGTCATTGGAAAATGTTTGTAGGATTGTTTAATACAATACTACAAACCTTGATTTTAAATTTCTCTGTAAAGTCTGTTGAGACTTGTGAAATACACTTGACAACTTTGTGCCTTGAAGCGTTTTAGTCAAATGTTTTAGCCTACTAAACAGTCGAATAACATAGCCGACAGTTGGAAGAAGTAAAATTCAGAGTCCTTATCGTTTTGTCGAGCGTATCTGCTTCCAACAAACTGTTTCCTGAAACACAAATACTTGTCCCAAACCAGTCGGATGTGTTTGCCCAGGTGTCTTTTGGTTGGCATAATTCTGTAAATGTCCACCTCAGTATAGGAGTTCACTGTACAAATGAAATTCTACAACCAAAATGTTTGTGATATCAGAGGAAGTTTTAAATGAATGCAATGAATTTGCCATAAAACCTGAAGAAGCC

Function

GO: NA

KEGG:

id description
K02740 PSMB8, LMP7; 20S proteasome subunit beta 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653522 lncRNA upstream 132926 33224305 ~ 33224508 (+) True G2320064
TU2653486 lncRNA upstream 133651 33149820 ~ 33223783 (+) True G2320029
TU2653479 lncRNA upstream 214265 33142894 ~ 33143169 (+) True G2320023
TU2653478 lncRNA upstream 214548 33142585 ~ 33142886 (+) True G2320022
TU2653477 lncRNA upstream 216822 33140182 ~ 33140612 (+) True G2320021
TU2653627 lncRNA downstream 94657 33455491 ~ 33455772 (+) True G2320162
TU2653628 lncRNA downstream 95060 33455894 ~ 33456189 (+) True G2320163
TU2653629 lncRNA downstream 95955 33456789 ~ 33456990 (+) True G2320164
TU2653630 lncRNA downstream 98926 33459760 ~ 33459991 (+) True G2320165
TU2653644 lncRNA downstream 126825 33487659 ~ 33487936 (+) True G2320178
XM_021560566.2 mRNA upstream 821 33353230 ~ 33356613 (+) False psmb13a
XM_021560567.2 mRNA upstream 821 33353230 ~ 33356613 (+) False psmb13a
XM_036971394.1 mRNA upstream 821 33353230 ~ 33356613 (+) True psmb13a
XM_036970726.1 mRNA upstream 73485 33239673 ~ 33283949 (+) False LOC110487595
XM_036970727.1 mRNA upstream 73485 33239675 ~ 33283949 (+) False LOC110487595
XM_021560576.2 mRNA downstream 68164 33428998 ~ 33433876 (+) True LOC100136325
XM_021560578.2 mRNA downstream 107780 33468614 ~ 33479472 (+) False LOC110488355
XM_021560579.2 mRNA downstream 107785 33468619 ~ 33479472 (+) True LOC110488355
XM_021560583.2 mRNA downstream 138046 33498880 ~ 33516670 (+) False LOC110488359
XM_021560586.2 mRNA downstream 138046 33498880 ~ 33516670 (+) False LOC110488359
TU2653501 other upstream 187317 33169463 ~ 33170117 (+) True LOC110487593
TU2653370 other upstream 414042 32942203 ~ 32943392 (+) True G2319921
TU2652081 other upstream 1402921 31953622 ~ 31954513 (+) True G2318792
TU2652051 other upstream 1415884 31934963 ~ 31941550 (+) False LOC110488305
TU2652043 other upstream 1417040 31934963 ~ 31940394 (+) False LOC110488305
TU2653625 other downstream 90325 33451159 ~ 33451620 (+) True G2320160
TU2655019 other downstream 976276 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 1488344 34849178 ~ 34850391 (+) True G2321656
TU2655502 other downstream 1609387 34970221 ~ 34970626 (+) True LOC110489302
TU2655559 other downstream 1912305 35273139 ~ 35277663 (+) True LOC110487604

Expression Profile