RNA id: XM_021560581.2


Basic Information

Item Value
RNA id XM_021560581.2
length 6366
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110488357
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33479769 ~ 33488466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatgacagcctgtgtaatgggttaactgcctgttcaggggcagaacaacagatttgtaccttgtcagctcgggggtttgaactagGCTACCACtagaaccactaggctaccctgccacccctgatAATGTTGCATTCCAGATCTGTTGCAGATGTTAAGCTGTTAAACTGAAATacttcattacatttttttttttaaatgactaggTAAGTCGGTTAATAAGGATCAGaccctttaaaaaatatattctctGAAAgttacccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatgttcttgaaatcatttgaaaggaaacacattgaagtttgtggaaatgtgaaattaatgtaggagaatataacacattagatctggtaaaatatacaaagaaaaaaaagcaTACCTTTTTTTTGTTCCATCTTTGAAAGGCAAGAGAACGGCCATTTAAATCACATAGTAgtttaggcgcaatttagattttgtacactgctgccatctactgTATGCAgcattttagactgatccaataaaccactgcatttctgttcaaaatgttgtatcaagtctgcccaaatgtgcctaattggtttattgatacattttcaaattCATACAtttgcatgctcctcaaacaacAGCATGGTAATCTATCACTGTAATAGtgactgtaaattggacagtgtagttTAACAATAATTGACATTTTATGCCCATACCAAATAAgtctgggaaatgttcttgttatttacaacctcatgctaatcacagtAGCCTATGTTAGTTTATGCGTCCCGCCAAGCAGAACGCCGATCCCAAATGCTTATTTTAATGAccgcctactccggccaaaccctgacgacgctgggccaattgtgagccgccctagtGGAAAAGTCGAAGCGAGAGCGCTCGCTCTCGCCAAATTATGTCTAGAATAAGCCCAATACATTTCTTTGGGTTTAATATGCAGTCCTAAACTTGTCTCCTACCTTCCCGTCTATggtggagacatgagcatctcgtcattatatacaccTCTATGGTTTAATAAACATTTTACCAATTTGACTAAACGCCACAAGAGGTCGTATTTGTCATAGCTTGGTTTTAGTCGGCTGGTCAGTATGTCTGACATTTCGTCAAAGGCGGTGCATGACGGGTTGTCTGCCAAATATGATGGGAAACAAATCATATCATTGGAAATGTATATGTAATCAACGGAGAGACGATAGCTTGTCGGGATAGAGAGAGAGTCTGGCTTTACGTAATTGTTTCAAAGGTGCACATTCTAAAACGCCTAGATGCATTCTCTGTCCATGGGGCAGGGCTGTAGCAGTAGCAGCTCAGGTGCCCCCTCTGGCTCGGTGGTACAGGTGTGCTTCCCCAGCTCCCAGGCGTCTGTACTGGACAGCCTGAACAGGCAGCGTGAGGAGGGCCAGCTCTGTGACCTCTCCATCCAGGTCCAGGGGCAGGTGTTCAAGGCCCACCGCTGTGTGCTAGCTGCATCCTCACCCTACTTTCACGACCAGgtGCTCTTGAAGAACATGTCCACTGTCTCCATCCCTGCCGTCATGGACCCACTGGCGTTCGAGAGCGTCCTGAGCTGTGCCTACACGGGCCAGCTGCGCATGCTCCGCGAAGACATCGTCAACTACCTCACCGTGGGCAGCGTGCTGCAGATGTGGCACATCGTGGACAAGTGCACAGAGCTCCTCAAAGAGGGGCGGGTGACGGGGAGTGGTAGTGCAATCCAGGGTGTCATTGGGGGAGCGCAGGGGAACCCTGGATGCAGTAGCAGTGAAAGCTCCCTAGGGGCTGGGAGTGCCCAAGCTGGGGGAAGCAACACCCAGccagcccctccccctcccagccGCCCGTCCCTGAGTGAGAGCCAGTCTCCCAGCAGCACCAACTACTTCAGCCCCAGAGACACTAACTTCGGAGGGGGAGCGGCGGCCGCTGGAGCTGCAGGGGAGGGAGGCGTGAACTCCACCCCCAGCTACTGCACCCCTTCTGGGGGCGAAGAGGCTTTCCTCATCGaagaagaggatgaagaagaggaagaagagctCCTATACCATAGGAAGCGAGGGAGCAGCAGGAGGAAGCCGACGGCCTCTGTCTCAGACCAAGAGGTTGGAGTCAGCGACAGCTTCGGGGTGTCGTCCTACCAAGACGGGGACGCCTCCCCTCTCCAGAAGCGGCCCACATACAGCCAGCCCAGCATCATGCCCCGGAAGCAGTGGGTGGTGGTAAAAACGGAGAGGCCCCAGGACGATGACCTGATCGTGGTGTCGGGTGAGGAAGGaccagatgaggaagaggagagagagttggagatgctgagggagagggagaggacgttCAACATATCCAACATTAGGACTCTGTCTGGAGAGTTGAGCAGCAAAGCGGACCATGAGATGGAGACACAGATGGATTACTGCCAGTCTTCTGAAGACTACCTCAAGTTTGATAGTGGTTTGATGGACCAGACTCCCCCACAGCACCTTCATGACAGCGCTGGTCAGGGTGGTGGCAGAACCGTCTCAGCCCTACTAGGCCAAGTCcagtctgctgctgctgctagagCTCAGCTCTTTCCCATAGACATGCAAGGCAACCAGATCCTCATGTACAGACAATCCTCTCTAGATTCCTCTCAACCCATAGGAATGGGAGGTGGTATGGCTGGGGCACCATTTAAAGGGCCAAACCTGGAGCATGGAGCAGTCCATTTGTCAGCACAGGGGGGTTTGGGCGGTGGCTTAGATGGACTGGACGGGGGTGGTGGCGGGAGTTCAGGGAAGGTGTTCATGTGCCACTGTGGAAAGACCTTCACCCACAAGAGCATGCGCGACCGTCACATCAACATGCACCTGGACCTGCGGCCTTTCAACTGCCCGGTTTGCGCcaagaagttcaagatgaagcACCACCTGACGGAGCACATGAAGACCCACACGGGGCTCAAGCCCTACGACTGCCACGGCTGCGGCAAGAAGTTCATGTGGCGTGACAGCTTCATGCGGCACCGCTCCCACTGCGAGGGACGGAGCGGAGCGGCTGGCAGGAGCGAGGATGGGGGAGGGTCCGACCGCGCTGATGGGATCTCCCCACAgcatctccctcatctccctctctcgacCGGCGAGGCCGGTCACGGTGTCGTTGGTGGCAGGAATGGGAACTCTGTCTTGTCCCCACATCATTCCAGTACAGGTAGCAGCAGTAATGCGGTCTCTTGCCTTACCATGGCCAGTTCTGGAGTGCTCTTAGGGGTCAACTCTCAGAGCGTGATGCAGGGTCAAGGTTCATCTGTGTTTGGTCTGGGGGTCAGCCGAGGTGGGTGTGAGGAGGAAGTGTGTGAAGTTGGTGCTAATGATAGTGTCACTTAAACACTCGTGTTGTTCACCCGTTTGGTTAAGACAAGAGGCTTTGAAGAGGCATTCCAATGACCATTGGAAAGTGCCCCCTTTGGCAAATGGCTTGGGACCATTGTACAGTTAGTTCAGTATACTCTTACATTTCAAGTTTATTCTCTGTATGACTGTTTAGTGGCACATTCTATGTCAAGAAAACCAAAAATCAAGAGATAATAACTCACCAATGACAGCTTTGGCAAAATGTTAACTAGAGTTCGAGAGGAAAGTTGCTGTTGTAAGTGATGTGTCCTATGATATTATACGCCTTTTCTGCCAGAGAATGTGCATTTCAAGTAAAAGTGTCTGAAGAAGACACTTGCAGTACTGCCATCTTGTTTCACACTGGTGATGTGTCCACTATCCAATTTCAGTGTTGTGGTACAGTATTACTGTAAATATAATCCTATTATCAGTTACTAATCTGTTACCATTACGATAGGTGCAAAACTATACAGTGTATAGTGCGTTTTTACAAGTAATCCTCATAAGTATTGATGGTAGACAAAAGCATTAGTCTGGAGATTAGGTTTCTTACAGATCTTTCCTCACTCAAACTGCCAAATTCCAACGCTTGCCTTGAGACAATGACTACTATTAACAGTAGGGTGGCTAAACAAAGCAGTATCCACTGTGATTCTGTATGTTTTTAACCCAGGTTTTACCTTCTATGAAGGCTCTGGATGTATTTTTCTGCAGGAGAAAAAAACTGGTCTGGATCCAAGAGAAAGACGTGTTGTTTTCAGTGTATACTTATCTGTTAGGTCAGGATTGGTAAAATGTATGAAAGATGTAGCTCGTGTTTGCAGCAGTTTGATGgatgaaatttgatttgaagtgagcTTAAACTAGGTGTATATAAAGATATTTATGTTTAGATTTATCAAATAGGGAATATAGAACTATTTAACTCTAATTTATGTCATTTGACTGCCTTACTATAGCATACAGTGGGCGTAAGGTTAgaaattgacacccttgataaagatgagcaacaaatgactgtataaagtaattgaaatactgagctatattgtatccCCCACAAATAATTGGGAAATGATTTCATACTGATACAATTGTTCAgagagagattttgtttaacaagtagtATTCGTTCTCAAAAGGTAGGGCTCAAACttattgacacccctgttttcagtACCTTGCGAGGACAACAGCACTGAACCTTTCTCTAAAATGgtttatgagttggagaacacgtTACGAGGGATcttggaccattcctccatacaaatCCTTGATATCCGTTGTCTGTGCTTATGTCAAGTCCGGAGACAGACTTTAAGGTAacacggcatcatgaactttacccagaaCCAGGAAATGTATGCCAAAAACCTGGTTACCtccagtgatgtaaagtactttagtattttttttgtgaatatctgtactttacaatgacaacttttacttcactacattcctaaagagaaTGTACTTTTACCTCCAtaaattttccctgacacccaaaggtacattacatttggaatgcttagcaggacatagAAATTgttaaattcacacacttatcaagagaacatccctactgcctcaatctggcggactcacgaaacacaaatgcttcatttgtaaattatgttggagtgtgctcctggctattcatacatttttttgtttaagaaaatggtgctgtcagGTTTGCTTATTATAATGAATTTTAAAttgcttttacttttgatacttagtatatttttgcaattacatttactttatatttaaaacaaaatacttttactcaagtagtattttactgggtgactttcactttagtcATTTTCATATTTCAGGTATTTTTAATTTGACTAAAGTATGAGTATTGGGGAtattttccaccactggttgcctctgccaggaatATAAAACTTATCCACAAGTGGCTCTTCCAGCaaaacaataaccccaagcacacatcaaaatccacaaagtaagggttaatttatttttaaaaatttcAACAGCCATCTGTCTCCAAACTTaaaccattgaaaacctgtggtttgtattgaagagggcagtccataaatGCAGACAAAGGATCTGGAAGgtggaatggtctaagatccctcccaatgtgttctccaactcatagcATTTTTTTTGATAACAGCTCAGTGCCATTATCCccacaaggtgaggtattgaaaacaggtaTACTTTATTTTCTCTAAGTAAgggtaaaaaatgtattaaacaaaaagcaatttctctgagcaattgtattagtataaaataataatttCCATTTCTTGttacatacaatatagctcagtattttaattgtaatttttgctGATCTTTATCAAGGTTGTCTAATTTCAGActtcactgtatatagatataaaGTGCTTCTGGTCAATAGTGAGtattatattgacaggtgtgagTCCCAGGCTCAAAAGAAAGAAGTCTAGACTCCCTGTTAATAGTCAAGTTGGCTGCTATTTGTGTGGGACTGAAAGGGAATTCCATTGACTGTTCAATAACTTGCCTGGCTGCATTTCATAGCATTTACACCACACAAGGAATTCAACTTCATGTACTGTAGCACCTTTTCATCAAATCTCAAAGTTCGTACCATTGTTTGAGGCTTAGCAGCCGTTATTCAGTTGTCATCTTTATGGCAGGACAAATACCTTTTTCATCAAGGGAAGCTTGTAGCTGCTGCACACTAGGTCTGACACAACGCTACTGTTCTTTGCATCTTCTGAATAGTGCATATTTTGggttacattttatttgatattgAACACGATTGTTGTTGCATATGCTTATAGAGCCGGAGTTGTCTTTCTTGGCCTACGGTAACAATGTCTAAGTACATCAATGTTATCTTTACTAATCTGTATCAAAAGGCAAAAATAAAACTGGTGTAATTTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2654424 lncRNA downstream 27763 33452718 ~ 33453025 (-) True G2320862
TU2654316 lncRNA downstream 65269 33413400 ~ 33415519 (-) False LOC110488353
TU2654318 lncRNA downstream 67566 33412827 ~ 33413222 (-) True G2320773
TU2654303 lncRNA downstream 71149 33406115 ~ 33409639 (-) False G2320759
TU2654443 lncRNA upstream 807 33489273 ~ 33489524 (-) True G2320879
TU2654583 lncRNA upstream 207673 33696139 ~ 33697090 (-) True G2320998
TU2654640 lncRNA upstream 321346 33809812 ~ 33881386 (-) True G2321052
TU2654666 lncRNA upstream 356216 33844682 ~ 33844981 (-) True G2321074
TU2654695 lncRNA upstream 379768 33868234 ~ 33873514 (-) True G2321096
XM_036971398.1 mRNA downstream 33026 33436455 ~ 33447762 (-) False LOC110488354
XR_005041339.1 mRNA downstream 33026 33436455 ~ 33447762 (-) True LOC110488354
XM_021560574.2 mRNA downstream 55326 33414867 ~ 33425462 (-) False LOC110488353
XM_036971396.1 mRNA downstream 85331 33392060 ~ 33395457 (-) False LOC110488352
LOC110488358 mRNA upstream 1118 33489584 ~ 33494907 (-) False LOC110488358
XM_021560588.2 mRNA upstream 29085 33517551 ~ 33529251 (-) True LOC110488361
XR_005041291.1 mRNA upstream 439189 33927655 ~ 33939393 (-) True LOC118946458
XM_036970733.1 mRNA upstream 659944 34148410 ~ 34166202 (-) False LOC110488376
XM_036970732.1 mRNA upstream 659944 34148410 ~ 34171168 (-) False LOC110488376
TU2654305 other downstream 60692 33416537 ~ 33420096 (-) True LOC110488353
TU2654306 other downstream 68286 33410499 ~ 33412502 (-) True G2320761
TU2654299 other downstream 85696 33363312 ~ 33395092 (-) True G2320755
TU2654149 other downstream 530850 32917502 ~ 32949938 (-) True G2320623
TU2653151 other downstream 893483 32585895 ~ 32587305 (-) True LOC110488319
TU2654445 other upstream 2625 33491091 ~ 33491998 (-) True LOC110488358
TU2655992 other upstream 872617 34361083 ~ 34361388 (-) True G2322234
TU2656058 other upstream 1010560 34499026 ~ 34506388 (-) False LOC110489328
TU2656057 other upstream 1014995 34503461 ~ 34506388 (-) False LOC110489328
TU2656059 other upstream 1014995 34503461 ~ 34506388 (-) True LOC110489328

Expression Profile