RNA id: XM_021560583.2


Basic Information

Item Value
RNA id XM_021560583.2
length 4408
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110488359
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 33498880 ~ 33516670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTAGAGCGGAGCAGACCCACAAGagggaaaaagaaaaaaaatctagtgGAAAAAAATCGGCGAATCTGAGGGTTCGGGCGGATTTGGACTGAGTTTCCGAACTGTCCCGACCCGCGGGACCCCCGGGGTTGAGAGGGAATCGACAACACCGAAATAATGGAAGATTCCCATTTCAACTCATCATACTTTTGGTCTCCCGTTCCTACAGTACAAGGACAGATTGAAAATGCCATGTTCCTGAACAAGATGAAGGAGCAGTTGAGTCCAGACAATAAGGGTTCTCCATCGTTCCCTCACTCCTCGCACTATCCCACCGCCGTGCTCACCATGGACGCTGGAGGCCGGGTGGTGCCCAAACAGGAAGGTGGAGGCGTCCAATTGAACGCCATAGGTGGGCACCTGCACCAGCCGCACACCTCACAGAATATCACGGTGGTGCCCGTCCAGTCCGCGGGCATCATGACGGCAGcGGGGCTAGTGATAACCACTCCCCAAGGCACCCTGGTCTCTCAACCCACCTCCACACAATCTTTTGTGTCCGGACcccctgccaccaccatgatagTGTCCTCACTGCACCCCACAAACACAGgCAAGAAAGAGGATTTGGTCATCCCTCCTGCTGTCATGCCAACGCCCGGGAAGCGGGGCAGGAAGAAGAAGTCAATGATGTCGAGGGCGGGCGCCACCCTCCCCCCAGGAAGTGATGCGTTGATTCTGGCACACCTGGCTGCTGGGGGACAGCACCACACTGCCGACCATTATGACTTATCAAATGATGAGGATGAGCATGGGAACAAAGATGGGACCAAATCATACAGGTGCCGGATGTGTGCGGTGACGTTCTTCAGTAAGTCGGACATGCAGATCCACGCCAAGTCTCACACGGAGGCCAAGCCGCACAAGTGCCCCCACTGCTCCAAGTCGTTCGCCAACTCCAGCTACCTGTCCCAGCACATCCGCATCCACAGCGGGGCCAAGCCCTACACCTGCTCCTACTGCCAGAAAACATTCAGGCAGCTCAGTCACTTACAGCAGCACACACGAAACCACACTGAGGGCAAACCGCACAAGTGTCCCCACTGCTCCAAATCGTTCTCCAACTCCAGCTACCTTGCCCAGCATATCCGCATCCACAGCGGGTCCAAGCCCTACACCTGCTCCTTCTGCCAGAAAACATTCAGGCAGCTCAGTCACTTACAGCAACACCACAGGATCCACACGGGGGATCGACCTTACAAGTGTATCCATCCTGGCTGTGAGAAAGCATTCACTCAGCTGTCCAACTTACAGTCTCACCGCCGGCAGCACAACAAAGACAAGCCGTATAAGTGCCACAACTGTAACCGCGGTTACACAGATGCGGCCAGTCTGGAGGTGCACCTGACCACTCACACGGTCAAACACGCCAAGCTTTACTCCTGTGGCCTGTGCAACCGCGCCTACACCTCGGAGACCTACCTGATGAAACACATGCGGAAGCACAACCCTGACCCCCTCACGGTGGCGGCAGCCATCGCCGCCCAGCAGGCTCAGGGCCACACCCCCGGAGGagggggcagggggaggggccgtgggagaggaggaggcgggGCAAATGTAGTGGGTGGTCCTGGAGGGGCGGGCCAGAACCCGGGGCAGAACCAGTCCCAGAACCCCAACAACCCTCAGCAGGGCAGCTACCCACAGACGGAGGGCGTGCCATGCTCCTTCGACCTGCACCAGTACAAGACGGTGTCGGCCGGCGAGATCCAGTACAAGCCAGTCAGCGTGGCTGATCTATCGGCCCATAAGGACCTCTGCTTGACCGTGTCCACCTCAGCCATCCAGGTGGAGCACATGAACTCATAGAGCGGGAGgatggacagaggggaggagaggagtttgAACAGAGCAGAAGATAGACagaatggagagggagggagggagttggaggcTGGGGTCACTTTAAATGGGAGgataggctcattgtaatggctggaatggaataaatggaactgtGTCAAACACAATCAATGTGTTTGATTCCAGCTATTTCAATGAGGCCGTTCTCCGATTTTTCCTCCCACCAGCCTACACTGACAGGGAGAAAGGACTAAGTAAAAGCGACACTGCCTTGTGGTTGGCGAAGGAATGGATGGAAGAATGAGGTTTGGCGATGCAAGACCCAATCAGAGAAGGAAAGGAGGGCGTGAAGAGGAAACCTGAGATGAAGAGGAAGTATGGGATATGTAGTCCAGTATTGAATGAAGAGATGATCTATGAATGGTTCAAAGAAGGCACTTAAAGGAGAAGACATCGaaaagagatgggggggggggggggggggggggggggggggctgatatAAAGAAGGCACTTGATCAATCTTGTATTTTTACCCTCATGGTTTCTCATTGTTTCACTTATTAGTTGTATGTATATTATCATATGTATGTATTTTTCTACCAACGACGTGGGGAAGTAAAAAGATTGTGCAAGGAAAGTGAGTGAGAAGAAACATCAAGAAACAGAGCAGATTTTGTATTTAAGAATGATCATTTTCTATATTCCCAACTCATTCTTGCAAAGCAAGGGGTATGGGGGAGAAAGGCAGATTGTGTTGAAACAATGAGGTACTTttaacaggtttttttttttttttttttaacctttcatACAGAGTATTAGTACCTTCGTTATTCTTATTGTACGCAACTATCAATGTTATCCTCATTATTATCCATTGGAAGATACTGTAATCTATGTAGATATGCAgtaccactcaaaagtttggacatgcctactcattccagggttttacatgggtactacatgagtccatgtgtgttatttcatagtgttgatgtcttcactatcattctacaatatagaaaatagtcaaaataaagacaatccctggaatgagtatgtgtccaaacttttgactggtactgtatatagaagTGACTTTTTTTTCATTCAAAAAAGGGAATGATGTACTGCCTCTGTAAAGAAAAAACAGCGATCTAAATACATatgaaaaagaaaacaaaataacTTCAAAAGTATGAATCGTTGACATGTATTTGTAACCCGTCCAATCACAgagctctattctgctctgtgtATTTATTGAGCTGGCTTGTGATTGGCCGGTGATCTTACGTATACTCCTTGTACTTCATTATGTGTCTTTTGAAATAACACAGTTCTCATTATTCTTATTGTTATCGCTCCTAATGCCGTTATTAACTACCCTTATGCTACACTCGCTGTATATGCACAGTACACATTCATATGAACAGACTGTTTCTCCTCGTAAGGACAATAAATTGAGACAGTCGAGATGACGATCTTTCTGTCCGATTCACCTTTTCCTGCATGCCGTGGCCAGTCAGTTTGAAGGTATTGTATCAATGTACAGTACACAGGTAAATTATACATTGAAATAGTGTGGAATATTGTGTATGCTGGGTTATTGTGTTAGGGACCCTAATTTGCCATTAGTGTCCCCTGTGCCATGCCCATTTCACAACCTTCATACACACAAGCACCAAAGAAGACGAGGGTTGTGGTTAATAGAATCAAAGGAATTCTGTATTTGATATCATTTAAGGGTATATGTTTCCTACAAAATACAAATGTCTGAGGTTCCTCATGACACTAGTGCACAGCCATTTGAAAACaatacagagacacattacaattTTGGCAAGTCTTCAAAAACAAAGTAAACAACACACTATTCTAATATAACTCAAAGAAAACGACATGAAACCAGTCCATGGAATTCATCTCATTATTTTCATTAAATGTATAGTATGTAACTTTTTCCCAAGCTTGGTTTGGTTTTCACTGAAACATGCCATTTAAGAATATATAATACAGCAACTGTTGGTATTATTTCTTGGTAAAACAAGAGGCAACCATGAAAGTAGATTGTGTCCTGGTTATAGTAAGATGCAACACAGAAACAGGGTAACATTGTGTTAGTCAGGATAAGGAGGTTTGATTACTCTTGTCTTGTGATGCAACTGAAGGTAAACGCTTTTTGACAAAGCCAGACCAAGACGCTGAGCTCAGAAGGTTCTTTAAGAAAGTATGATAAATGTGACAACTTGACAGAAACAGCTGATTTTAGATATGATTTTCTTATCTTTGAGTACAGTACAACATGTTTTAAGCTAAATTGAACAGACATTTTAACATACTTCACTAAAACAGGTACTGTAGAGGCAGTTCTACAGTAATTACAACATCCAAAATATCCCTTATTTTGATGCTTTGGACATATTTTGAACCTCTGGTTCAGTCCCTGGTTTGGTTACTTATCCATAGCGGGAGTACCTGTTATGGGTCATGCCTTCAGGCTCCTGACAAATTACATAGAAAAAAcccataaataaatacaacaacaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653644 lncRNA upstream 10944 33487659 ~ 33487936 (+) True G2320178
TU2653630 lncRNA upstream 38889 33459760 ~ 33459991 (+) True G2320165
TU2653629 lncRNA upstream 41890 33456789 ~ 33456990 (+) True G2320164
TU2653628 lncRNA upstream 42691 33455894 ~ 33456189 (+) True G2320163
TU2653627 lncRNA upstream 43108 33455491 ~ 33455772 (+) True G2320162
TU2653741 lncRNA downstream 120897 33637567 ~ 33638583 (+) True G2320260
TU2653822 lncRNA downstream 336780 33853450 ~ 33857321 (+) True LOC110488369
TU2653863 lncRNA downstream 417903 33934573 ~ 33935050 (+) True G2320373
TU2653892 lncRNA downstream 463824 33980494 ~ 33980770 (+) True G2320396
TU2653907 lncRNA downstream 482450 33999120 ~ 33999664 (+) True G2320411
XM_021560578.2 mRNA upstream 19408 33468614 ~ 33479472 (+) False LOC110488355
XM_021560579.2 mRNA upstream 19408 33468619 ~ 33479472 (+) True LOC110488355
XM_021560576.2 mRNA upstream 65004 33428998 ~ 33433876 (+) True LOC100136325
XM_021560568.2 mRNA upstream 138046 33357434 ~ 33360834 (+) True psmb8a
XM_021560566.2 mRNA upstream 142267 33353230 ~ 33356613 (+) False psmb13a
XM_021560590.2 mRNA downstream 13565 33530235 ~ 33535712 (+) True LOC110488363
XM_036970907.1 mRNA downstream 19875 33536545 ~ 33552244 (+) True LOC110488362
XM_021560592.2 mRNA downstream 36505 33553175 ~ 33558428 (+) True LOC110488364
XM_036970682.1 mRNA downstream 47816 33564486 ~ 33601775 (+) False LOC110488365
XM_021560594.2 mRNA downstream 47818 33564488 ~ 33642478 (+) True LOC110488365
TU2653625 other upstream 47260 33451159 ~ 33451620 (+) True G2320160
TU2653501 other upstream 328763 33169463 ~ 33170117 (+) True LOC110487593
TU2653370 other upstream 555488 32942203 ~ 32943392 (+) True G2319921
TU2652081 other upstream 1544367 31953622 ~ 31954513 (+) True G2318792
TU2652051 other upstream 1557330 31934963 ~ 31941550 (+) False LOC110488305
TU2655019 other downstream 820440 34337110 ~ 34339197 (+) True G2321378
TU2655325 other downstream 1332508 34849178 ~ 34850391 (+) True G2321656
TU2655502 other downstream 1453551 34970221 ~ 34970626 (+) True LOC110489302
TU2655559 other downstream 1756469 35273139 ~ 35277663 (+) True LOC110487604
TU2655443 other downstream 1924364 35441034 ~ 35493951 (+) False LOC110489253

Expression Profile