RNA id: XM_021561942.2


Basic Information

Item Value
RNA id XM_021561942.2
length 3508
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110489268
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 35558560 ~ 35568391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTCGCTCAAACACTGAACCACAGTGcactgaaagacagacagaggacggagggacagaggaagagagcgcAACCTGTGAGAGAAAATCAACAAAGTGAAAGAAAGCCAAGAAACAAAGAAAGAAGAGTGAGAGGAAAGTGGGTGGAGAGACAGTGCTTCAGTCAGAACTCGAGAGCCAAAATCTTTAACCCAACTGTTAAAAGTAGCTGTCGCCATGGCCCCCAAGAAGAAGATCAATCGTACAAAGGAGATTGCCATGGAGCCAGTTGTCACCCAGGTGAGCACTGTTACTACTCAGATGACaggaggaggagtggtggtggtggagggcgTGAAGAAGATCGAGGAGATGGCTGCACTGGATATCGTGCAGCTCAACCACATCAACCTCCCCCTGCCCCCTCCCATCATCAAGCCCGGAGAAAAgggcctgggcctgggctgtgaAGTGACCCGCCCCCTCCACGGCAACGCCCTGCTGGAGGAGCTGAGCCGCATGCGCCAGGAGCGTTTCCTCACTGACCTGGAGCTGGCCTGTAAGACCAAGGCCTTCGACGTGCACAAGCTGGTCATTTCTTCCGTCAGCCAGTACTTCCGGGAGATCCTGGCCAAGGACCCCGGAATGAAGCGTCTAGAGCTGTCGTCGCTCTCCCCCCTCGGCCTGGCCAACGTGATCACCTTCGCCTACCTGGGCCGCGTCCACATGTCCCTGTACACCATCGGCTGCACTGTGTCCGCCGCTGCCACCCTCCAGATCCCCCAGCTGCTCCAGATGTGCATGGACTTCCTGCTGGCCGAGATGAACGTGCAGACGTGCGTGTACGTGTGGAACATCGCCGCCGCCTACGGCCTGATTCCCGTGCGCGACGCGGCCCGCCGCTTTGTGCTGGAGAATTTTGTCGCGTTCACCGAGACGCCCCTGTTCAACCAGCTGACCCTGGAACAGATCACAGCCTTCCTCCAGGAGGACAGCCTGCTGCTGCCATCTGAAGTCACTGCCTTCCAGTTGGCCATGAAGTGGCTGGACTTCGACCCCAAGCGCCAGGTGCACGCCGCCGAGCTGCTGTCCCACGTGCGCTTCGAGACCATTCCTGCCAGCGAGCTGGTCAGCGAGATCCAGCCCGTGGCGAGGATGATGATGGACCCTCACTGCCACCGCCTGCTAGTGGATGCCATGAACTACCACCTGCTGCCCCACCAACAGAACACACTGCAGTCTCGTCGCACGCAGGTGCGTGGAGGACAGGCCACCCTGCTGACTGTTGGGGGGCGTCCCTCCATCACCGAGCGGGCACTGAGCAGAGTGGTGCTGTGGAGAGATCCACGTGAGGGTGCGGCAACCTGGCGTCACCTTTCCCAGCTACCCGCTAAGAGCTTCAACCAGTGTGTGGCTGTGATGGACGGCTTTCTGTACGTGGCAGGAGGAGAGGACCAGAACGATGCACGCAACCAGGCCAAGCACGCTGTCAGCACCCTCAGCAGGTACGACCCTCGCTTCAACACCTGGCTGCATCTGGCTAGCATGCGCCAGCGCCGCACCCACTTCAGCCTGGTAGCCACCGGCGGGCGCCTGTACGCTGTTGGCGGCCGCAACGTGGAGGGCCTGCTGGCCACCACCGAGAGCTACCTGCCTTCCTCCAACATCTGGCAGCTCAAGACGCCCATGGAGATGCCACGCTGTTGCCACGCCAGTGCCGTGCAGCCCTCCGGAGACATCCTGGTGACCGGCGGCTACATCAACTGTGCCTACTCGCGCTCCGTGGCCTGCTACAACATTGAGACGGACACCTGGAGTGAGAAGGCCAGCCTGGAGACCCCCCGAGGATGGCACTGCTCCTCCACCCTGGGAGGGAAGGTGTACGTGGTGGGTGGTAGCCAGCTGGGCCCCAGCGGAGACCGCGTGGACGTCCTGTCCATGGAGGTGTTCTCCCCAGAGAACGGTGAGTGGAGCCGGGCCTCCCCCTTGCCCCTAGGCGTGAGCACGGCAGGCCTGTCGCCCCTCGGGGAACAGCTGTACCTGATGGGTGGCTGGAACGAGGCCGAGAAGCGCTACAAGGCGGCCGTGCAGAAGTACACCCCGGCAACAGACAGCTGGTCCATGGAGGAGAATCTGCCCGAGGCCACTGTGGGCGTGTCCTGCTGCACCCTGACCCTCCCACCCCGCCACACCCCCCGCAGGCAACAGCACCGCAACACCCCAACAACCAAAGAGGAGCAGCAactgccacagagagagagagcagtgtggcCCCACAGTCCATCACTGCCTAAGAGCgagatttttaaaaataaaataaaagaggaAGATGTAAGGGAGGAGTGatagagatgaaggagagaggagagctgtaGACAGAGGAACAGAGCAGTAAAGAAAGGAAAGTTAAAGATGGAAGGCAGAGTGAATTAACTCCTATACTGGTATGACAACAGCACATTAGGGAGTTCAATGGAATGGGGCCTATGTGGTTGTTGAATGTGAATATGACTGTAAATTAAATCAATTTGCAGTATGTGTACAATATGTATTGCAGTTAGTAAAGTGGAACATGTAACGACTGTGGTgattacgtgtgtgtgtttgtgtgtgtgtgtgtgtgaacattctGGAGTGAATGATAGTGTCTGGGTGTTCTACATTAAGTCATACAATCTTATGACAAATATTGCAATATGATTTTCAGCAAAACGTTAAACATTTCTCATTTTTAAAAAACAGCGAATATATGTATTTATAATACTATGTGTATAGCAGAACTGTAAAGTATGTTTGTCTGAAGTAGTTTAGCTCAGAAAAGTTTTATtatacatacttttttttttaagtgcaaTGAAGTGTTGCAGTGACTGCTGAAGTATAGGTGGACAAGGTTAGAGGTCAAAATAACATGATTACAATGTCACCCACTGACGAACACAGGTAGAGAATGTCTGACAGGGCGATAGCCCAGCAAACTGTGACCCTGACCTATTCGCAGGCCTCAGAATTTCCACCTACCAGAAACAAAACAGCAGACCTTTGATTCTGAAATTAAATAGGTGACCGTTTAGAGATTTGGCTCAGGTCATGTTTTGTATTTAGGCCATGGGTTCCAGCTCACCTGTGTTTGTTATAGAGTCGACCTCCATCCAGGCGATACAATGACAAGCTACCAGGAATCAGTAAAGCTACCAGGAATCAGTAAAACTCCCATAGATGGGAACCTGCCTAGAAAAAAATAGGGGTCAAGTAAATGAGGACTCAACTATAATGTCATTGGATGCTAATTAGACTTATTTGATTGGAGGAATCACTCTATTCGTCTTACTGAGAGTTGCTGGCACAGGGTAAGTGTGTGTTGGTGCTTTTGGCATTTACATAAGCAGCCCAATTCATTTCTTTGACCAATTAGTAGAAAAATATCTGAAaagggctgcctgtgtaaacagccATCGTCTGTCCAGACAAGCAATTCCAGAGGCAACGTAACCCTGGTGTTTCACTGAATAAAGCCAAACTGACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2655741 lncRNA upstream 19666 35537145 ~ 35538895 (+) True G2321999
TU2655739 lncRNA upstream 21585 35536421 ~ 35536976 (+) True G2321998
TU2655475 lncRNA upstream 22723 35535066 ~ 35535838 (+) True G2321777
TU2655431 lncRNA upstream 122429 35425707 ~ 35436132 (+) True G2321733
TU2655491 lncRNA upstream 198408 35359655 ~ 35360153 (+) True G2321793
TU2655446 lncRNA downstream 1403 35569794 ~ 35572138 (+) True G2321748
TU2655762 lncRNA downstream 4093 35572484 ~ 35572742 (+) True G2322019
TU2655763 lncRNA downstream 4663 35573054 ~ 35573277 (+) True G2322020
TU2655765 lncRNA downstream 7060 35575451 ~ 35577904 (+) True G2322022
TU2655766 lncRNA downstream 15423 35583814 ~ 35584186 (+) True G2322023
XM_036971071.1 mRNA upstream 37108 35492305 ~ 35521453 (+) False LOC110489253
XM_036971112.1 mRNA upstream 66043 35487909 ~ 35492518 (+) True LOC118936453
XM_036971109.1 mRNA upstream 70392 35458552 ~ 35488169 (+) True LOC110489254
XM_021561977.2 mRNA upstream 263363 35281588 ~ 35295198 (+) False LOC110489282
XM_036971096.1 mRNA upstream 280877 35115694 ~ 35277684 (+) False LOC110487604
XM_021562008.2 mRNA downstream 69821 35638212 ~ 35643788 (+) True LOC110489299
XM_021561938.2 mRNA downstream 124878 35693269 ~ 35702960 (+) False ncdn
XM_021561939.2 mRNA downstream 125214 35693605 ~ 35702960 (+) True ncdn
XM_021561971.2 mRNA downstream 135523 35703914 ~ 35715579 (+) False LOC110489281
XM_021561972.2 mRNA downstream 135529 35703920 ~ 35715579 (+) False LOC110489281
TU2655429 other upstream 47936 35502604 ~ 35510625 (+) True LOC110489253
TU2655448 other upstream 58346 35495294 ~ 35500215 (+) False LOC110489253
TU2655436 other upstream 60434 35491131 ~ 35498127 (+) True G2321738
TU2655443 other upstream 64610 35441034 ~ 35493951 (+) False LOC110489253
TU2655559 other upstream 280898 35273139 ~ 35277663 (+) True LOC110487604
TU2655405 other downstream 18196 35586587 ~ 35593678 (+) False G2321721
TU2655413 other downstream 18196 35586587 ~ 35594913 (+) False G2321721
TU2655401 other downstream 19389 35587780 ~ 35594913 (+) False G2321721
TU2655410 other downstream 21650 35590041 ~ 35594913 (+) True G2321721
TU2657401 other downstream 724387 36292778 ~ 36295589 (+) True LOC110511601

Expression Profile