RNA id: TU2615273


Basic Information

Item Value
RNA id TU2615273
length 433
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2287182
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 77559 ~ 77991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgcacgtcatgcaatgcacgtctcaccatccaactctgcactcacacactgtacaaaatatatgaacccccccaccagacacagtaagttgctagctaatactggcgggaattctttacaacaaatattctccaaaaaccgctgcatcttatgtgtgatgttcgaataacatttacaaacaatttgatataaattgtacatttaaatcatcacttgagagtataaaaatcacttgatgtacagtgctttgcaaccaacaacttaccgctggtttggtgcttgttcactgggacgattctaactggaacatcccccctcgtaagcaagctacgcaaaccagccaataagatgccatgttgagtaggtgaaggcaagacaaactcaaaccaaaaacccattggcttaacaataaagtggcaaggggaatcacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615264 lncRNA upstream 26265 50283 ~ 51294 (+) True pabpc1b
TU2615256 lncRNA upstream 34223 43117 ~ 43336 (+) True G2287167
TU2615249 lncRNA upstream 42711 23604 ~ 34848 (+) False G2287160
TU2615279 lncRNA downstream 2041 80032 ~ 102732 (+) False rnf19a
TU2615297 lncRNA downstream 21662 99653 ~ 168304 (+) True G2287201
TU2615277 lncRNA downstream 53650 131641 ~ 134719 (+) False rnf19a
TU2615278 lncRNA downstream 53650 131641 ~ 134719 (+) True rnf19a
TU2615328 lncRNA downstream 85226 163217 ~ 163694 (+) True G2287226
XM_036971329.1 mRNA upstream 16882 45494 ~ 60677 (+) False pabpc1b
XM_036971330.1 mRNA upstream 16882 45494 ~ 60677 (+) False pabpc1b
XR_005041329.1 mRNA upstream 16882 45494 ~ 60677 (+) False pabpc1b
XR_005041330.1 mRNA upstream 16882 45494 ~ 60677 (+) False pabpc1b
XM_036971331.1 mRNA upstream 16882 46016 ~ 60677 (+) False pabpc1b
XM_036971765.1 mRNA downstream 1937 79928 ~ 133393 (+) False rnf19a
XR_005041408.1 mRNA downstream 1937 79928 ~ 133393 (+) False rnf19a
XR_005041409.1 mRNA downstream 1937 79928 ~ 133393 (+) False rnf19a
XR_005041410.1 mRNA downstream 1937 79928 ~ 133393 (+) False rnf19a
XR_005041411.1 mRNA downstream 1937 79928 ~ 133393 (+) False rnf19a
TU2615343 other downstream 155751 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 408802 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 408802 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 408802 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 408802 486793 ~ 487661 (+) True G2287470

Expression Profile