RNA id: TU2615337


Basic Information

Item Value
RNA id TU2615337
length 439
lncRNA type intronic
GC content 0.54
exon number 2
gene id G2287233
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 202807 ~ 203603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTCCATATCCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATAACCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATATCCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATATCCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATAACCACACAGCTCCATATCCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATAACCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATAACCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATAACCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATATCCACACAGCTCTAACCCTCCCCAGAGTCAGCTCCATATCCACACAGCTTCATAACCACACAGCTCTAACCCTCACCAGAGTCAGCTCCATATCCACACAGCTCTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615332 lncRNA upstream 22554 177949 ~ 180253 (+) False G2287230
TU2615333 lncRNA upstream 23721 177949 ~ 179086 (+) True G2287230
TU2615297 lncRNA upstream 34503 99653 ~ 168304 (+) True G2287201
TU2615328 lncRNA upstream 39113 163217 ~ 163694 (+) True G2287226
TU2615277 lncRNA upstream 68088 131641 ~ 134719 (+) False rnf19a
TU2615356 lncRNA downstream 11860 215463 ~ 216460 (+) True G2287248
TU2615359 lncRNA downstream 13970 217573 ~ 260640 (+) True G2287250
TU2615380 lncRNA downstream 51438 255041 ~ 302892 (+) True G2287264
TU2615381 lncRNA downstream 52954 256557 ~ 259143 (+) True G2287265
TU2615385 lncRNA downstream 60632 264235 ~ 264879 (+) True G2287268
XM_036970870.1 mRNA upstream 28380 154976 ~ 174427 (+) False stk3
XM_021559733.2 mRNA downstream 30073 233676 ~ 239568 (+) False rpl30
XM_036971641.1 mRNA downstream 113300 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA downstream 113427 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA downstream 113427 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA downstream 113429 317032 ~ 349528 (+) True spire1a
TU2615343 other downstream 30139 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 283190 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 283190 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 283190 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 283190 486793 ~ 487661 (+) True G2287470

Expression Profile