RNA id: TU2615385


Basic Information

Item Value
RNA id TU2615385
length 518
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2287268
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 264235 ~ 264879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCTCCTCAGAGTCCCTGATGTAAGTGTTGATGAGCATGCCGTACATCTCAGAATGGATGTTCTCTATGAGGATCTGGAACCCATAGAAGGATCGGGCCTCTGGAAGCTGTACCTCCTGACTAAACCTCTGGACCTGAGGGATGGATAACGTTGGGtcagcagcgtagcctagtggttagagcgttggactagtaaccaaaaggttgcaagatcaaggtaaaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatgtgttcttaactgacttgccgagttaaataaaggtaaaaaaggaTGAAGGATGAATAGGCTGGGGtgagaatacagtataatacagaataatacagtactactgtatAGCTACATCAACAACAAATAGGCTGGGGTGAGAACACAGTataatacagtactactgtatAGCTACATCAACAACAAATAGGCTGGGGTGAGaacacagtataatacagtataatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615359 lncRNA upstream 3595 217573 ~ 260640 (+) True G2287250
TU2615381 lncRNA upstream 5092 256557 ~ 259143 (+) True G2287265
TU2615356 lncRNA upstream 47775 215463 ~ 216460 (+) True G2287248
TU2615337 lncRNA upstream 60632 202807 ~ 203603 (+) True G2287233
TU2615332 lncRNA upstream 83982 177949 ~ 180253 (+) False G2287230
TU2615386 lncRNA downstream 687 265566 ~ 283496 (+) True G2287269
TU2615353 lncRNA downstream 8502 273381 ~ 290978 (+) True G2287245
TU2615397 lncRNA downstream 38660 303539 ~ 304001 (+) True G2287280
TU2615350 lncRNA downstream 45039 309918 ~ 310293 (+) True G2287242
TU2615349 lncRNA downstream 45773 310652 ~ 311552 (+) True G2287241
XM_021559733.2 mRNA upstream 24667 233676 ~ 239568 (+) False rpl30
XM_036970855.1 mRNA upstream 58718 175807 ~ 205517 (+) True LOC110489350
XR_005041287.1 mRNA upstream 89808 154976 ~ 174427 (+) False stk3
XM_036971641.1 mRNA downstream 52024 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA downstream 52151 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA downstream 52151 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA downstream 52153 317032 ~ 349528 (+) True spire1a
XM_021559712.2 mRNA downstream 211353 476232 ~ 480567 (+) False psmg2
TU2615343 other upstream 23595 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 221914 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 221914 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 221914 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 221914 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 1008495 1273374 ~ 1274170 (+) True G2287973

Expression Profile