RNA id: TU2615353


Basic Information

Item Value
RNA id TU2615353
length 795
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2287245
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 273381 ~ 290978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaacccttgaatgagtaggtgtttaaAACTTTGCTACTGTGTGTCAAATATAAAACATCCCCAAAATGCTTATTTCGCTCAAATGttatgcacaaatgtgtttacatccctgttagtgagcatttctctttgccaagataatccatccacctgacagttgtggaatatcaataaactgattaaacagcatgatcattacacaggtgcaccttgtgctggggataatacaaggccactaaaatgtgcagttttatcacaacacaatgccacagatgtctcaagttgagggagtgtgcaattggcatgctgactgcaggaatgtccaccagagcttttgcatgttaatttctctaccgtagGCTGCCTCCAACATTtgagaaaatttggcagtacgtcgaaccggcctcaaccgcagaccatgtgtaactacgccagtccaggacctccacatctggcttcttcaccggcAGGAtcatgagaccagccacctgacaaaactgaggagtatttgtcTGTAATATAGCTcttgtggggaaaaaaacaatcattctgattagctgggcctgtgcccctgcccagtaatGTGAATTCCATAGATtcgggcctaatgaatttatttcaattgactgatttccctatatgaactcagtaaaatctttcaaattgttgcattttgttatatatatatatatatacacacacacacacacacagggtggttCCTCCCtccatatatgcacacacacacaccctctctagcacttgtctgtctgtgtatatacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615385 lncRNA upstream 8502 264235 ~ 264879 (+) True G2287268
TU2615359 lncRNA upstream 12741 217573 ~ 260640 (+) True G2287250
TU2615381 lncRNA upstream 14238 256557 ~ 259143 (+) True G2287265
TU2615356 lncRNA upstream 56921 215463 ~ 216460 (+) True G2287248
TU2615337 lncRNA upstream 69778 202807 ~ 203603 (+) True G2287233
TU2615397 lncRNA downstream 12561 303539 ~ 304001 (+) True G2287280
TU2615350 lncRNA downstream 18940 309918 ~ 310293 (+) True G2287242
TU2615349 lncRNA downstream 19674 310652 ~ 311552 (+) True G2287241
TU2615399 lncRNA downstream 23457 314435 ~ 314634 (+) True G2287282
TU2615601 lncRNA downstream 104083 395061 ~ 402253 (+) True G2287437
XM_021559733.2 mRNA upstream 33813 233676 ~ 239568 (+) False rpl30
XM_036970855.1 mRNA upstream 67864 175807 ~ 205517 (+) True LOC110489350
XR_005041287.1 mRNA upstream 98954 154976 ~ 174427 (+) False stk3
XM_036971641.1 mRNA downstream 25925 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA downstream 26052 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA downstream 26052 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA downstream 26054 317032 ~ 349528 (+) True spire1a
XM_021559712.2 mRNA downstream 185254 476232 ~ 480567 (+) False psmg2
TU2615343 other upstream 32741 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 195815 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 195815 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 195815 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 195815 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 982396 1273374 ~ 1274170 (+) True G2287973

Expression Profile