RNA id: TU2615349


Basic Information

Item Value
RNA id TU2615349
length 901
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2287241
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 310652 ~ 311552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGAAGACTGACATTATAAATTTGGGTTGTATAACATTGATAGTAGGGTGCTAACATGTTGTGGGTAGATGGAAGGATTtatgtgcaaatgtatttgtagCCGGAGGCTAAGTATATACGGGGCATATGTTTGCGTAAGGGTGTTAGTTGCAGAGATAGTTTTGTCATTTCTATTGTCACTTTCAGTGAGGGGTTTGTCAAAGAAGATACAATGCTTGAAAAAATAACCACAGTTCCCTGTAAACAGGAGGCCACCTCACCAGAAGGGAAgttggctgtagtagtagtagcatcacaTCTCCTGCAGAGGGCGCCGAACGATAGGTGACCATTGCTGTACATTCATACCCCAGGGTGACTATTGTAGTGGAGCATCTGAAAGAGCTCAGCGGTGATCTCGCAAACGAACACCAACCAGACAACAATTGGAATCCGTTTGGATGGGTTCAGTCATTGTTTGGTGTTAGGGGGGCTACAAAATTTCATTGGTTGATTACATGTCTGATAAAGCTGATAATCCTGATCACCGAAAACACTGAATTAATGGTGCAGCATGTCCATAGGCCATGCTCATGGCGGGGGGGTTCTGTAAACGGTGCTCCCAAGGTAGTGTTAAGGGCCTACCGTCATGGTGACCCGTGGCAATGTGGACAGTGTCAACGAAGTGATTGCCTTGTGTGTGTGGTGATAAAGAATGTACTGATGTTTAACATTCATATGTTCCTTTCCCCCTTCTGAGAATGAATTGCACTATGTGAAGCTTTGAAACTCAATGACAACATTGTCATTTACGGGCTAAGTGTAAGAAAGTATTTCATTTTCCCTCTTTCCAAACCATGTTAGTGCTTGTTTGATGAAAATGATGTGCTTGTTTGATGAAAATGATGAAAATGATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615350 lncRNA upstream 359 309918 ~ 310293 (+) True G2287242
TU2615397 lncRNA upstream 6651 303539 ~ 304001 (+) True G2287280
TU2615353 lncRNA upstream 19674 273381 ~ 290978 (+) True G2287245
TU2615386 lncRNA upstream 27156 265566 ~ 283496 (+) True G2287269
TU2615385 lncRNA upstream 45773 264235 ~ 264879 (+) True G2287268
TU2615399 lncRNA downstream 2883 314435 ~ 314634 (+) True G2287282
TU2615601 lncRNA downstream 83509 395061 ~ 402253 (+) True G2287437
TU2615603 lncRNA downstream 85635 397187 ~ 401790 (+) True G2287439
TU2615610 lncRNA downstream 90791 402343 ~ 403679 (+) True G2287445
TU2615613 lncRNA downstream 125196 436748 ~ 437227 (+) True G2287448
XM_021559733.2 mRNA upstream 71084 233676 ~ 239568 (+) False rpl30
XM_036970855.1 mRNA upstream 105135 175807 ~ 205517 (+) True LOC110489350
XR_005041287.1 mRNA upstream 136225 154976 ~ 174427 (+) False stk3
XM_036971641.1 mRNA downstream 5351 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA downstream 5478 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA downstream 5478 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA downstream 5480 317032 ~ 349528 (+) True spire1a
XM_021559712.2 mRNA downstream 164680 476232 ~ 480567 (+) False psmg2
TU2615343 other upstream 70012 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 175241 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 175241 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 175241 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 175241 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 961822 1273374 ~ 1274170 (+) True G2287973

Expression Profile