RNA id: TU2615613


Basic Information

Item Value
RNA id TU2615613
length 480
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2287448
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 436748 ~ 437227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttggtcagagatgaagattcaggtaaggaacctattagacaccctaggtcagagaagaagattcaggtctggaacccataagacagcctaggtctggaacccataagacatcctaggtcagagaggaagattcaggtctggatcccataagacaccctaggtcagagaggaagattcaggtctggaacccataagacaccctaggtcagagagggagattcaggtctggaacccataagacaccctaggtcagagatgaagattcagctctggaacccataagacaccctaggtcagagatggagattcaggtctggatcccataagacaccgtatgtcagagagggagattcaggtctggaacacataagacacccttggtcagagatgaagattcaggtaaggaacctattagacaccctaggtcagagaagaagattcaggtctggaacccataagacagcctaggtctggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615610 lncRNA upstream 33069 402343 ~ 403679 (+) True G2287445
TU2615601 lncRNA upstream 34495 395061 ~ 402253 (+) True G2287437
TU2615603 lncRNA upstream 34958 397187 ~ 401790 (+) True G2287439
TU2615399 lncRNA upstream 122114 314435 ~ 314634 (+) True G2287282
TU2615349 lncRNA upstream 125196 310652 ~ 311552 (+) True G2287241
TU2615615 lncRNA downstream 1879 439106 ~ 463255 (+) True G2287449
TU2615617 lncRNA downstream 26235 463462 ~ 463663 (+) True G2287451
TU2615619 lncRNA downstream 30919 468146 ~ 468587 (+) True G2287453
TU2615622 lncRNA downstream 34095 471322 ~ 471635 (+) True G2287456
TU2615630 lncRNA downstream 45333 482560 ~ 482891 (+) True G2287464
XM_036971641.1 mRNA upstream 87220 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA upstream 87220 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA upstream 87220 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA upstream 87220 317032 ~ 349528 (+) True spire1a
XM_021559733.2 mRNA upstream 197180 233676 ~ 239568 (+) False rpl30
XM_021559712.2 mRNA downstream 39005 476232 ~ 480567 (+) False psmg2
XM_036971455.1 mRNA downstream 39005 476232 ~ 480778 (+) False psmg2
XM_036971456.1 mRNA downstream 39005 476232 ~ 480835 (+) False psmg2
XR_005041349.1 mRNA downstream 39006 476233 ~ 482157 (+) False psmg2
XM_036971454.1 mRNA downstream 39015 476242 ~ 482157 (+) True psmg2
TU2615343 other upstream 196108 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 49566 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 49566 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 49566 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 49566 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 836147 1273374 ~ 1274170 (+) True G2287973

Expression Profile