RNA id: TU2615617


Basic Information

Item Value
RNA id TU2615617
length 202
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G2287451
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 463462 ~ 463663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccctaggtcagagagggagattcaggtctggaacccataagacaccctaggtcagagaagaagattcaggtctggaacccataagacaccctaggtctggaacccataagacaccctaggtcagagagggagattcaggtctggaacccataagacaccctaggtaagagatgaagattcagctctggaacccataagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615615 lncRNA upstream 207 439106 ~ 463255 (+) True G2287449
TU2615613 lncRNA upstream 26235 436748 ~ 437227 (+) True G2287448
TU2615610 lncRNA upstream 59783 402343 ~ 403679 (+) True G2287445
TU2615601 lncRNA upstream 61209 395061 ~ 402253 (+) True G2287437
TU2615603 lncRNA upstream 61672 397187 ~ 401790 (+) True G2287439
TU2615619 lncRNA downstream 4483 468146 ~ 468587 (+) True G2287453
TU2615622 lncRNA downstream 7659 471322 ~ 471635 (+) True G2287456
TU2615630 lncRNA downstream 18897 482560 ~ 482891 (+) True G2287464
TU2615635 lncRNA downstream 19520 483183 ~ 483457 (+) True G2287466
TU2615645 lncRNA downstream 21733 485396 ~ 486605 (+) True G2287469
XM_036971641.1 mRNA upstream 113934 316903 ~ 349528 (+) False spire1a
XM_036971638.1 mRNA upstream 113934 317030 ~ 349528 (+) False spire1a
XM_036971640.1 mRNA upstream 113934 317030 ~ 349528 (+) False spire1a
XM_036971639.1 mRNA upstream 113934 317032 ~ 349528 (+) True spire1a
XM_021559733.2 mRNA upstream 223894 233676 ~ 239568 (+) False rpl30
XM_021559712.2 mRNA downstream 12569 476232 ~ 480567 (+) False psmg2
XM_036971455.1 mRNA downstream 12569 476232 ~ 480778 (+) False psmg2
XM_036971456.1 mRNA downstream 12569 476232 ~ 480835 (+) False psmg2
XR_005041349.1 mRNA downstream 12570 476233 ~ 482157 (+) False psmg2
XM_036971454.1 mRNA downstream 12579 476242 ~ 482157 (+) True psmg2
TU2615343 other upstream 222822 233742 ~ 240640 (+) True rpl30
TU2615646 other downstream 23130 486793 ~ 487391 (+) False G2287470
TU2615647 other downstream 23130 486793 ~ 487482 (+) False G2287470
TU2615648 other downstream 23130 486793 ~ 487551 (+) False G2287470
TU2615649 other downstream 23130 486793 ~ 487661 (+) True G2287470
TU2616270 other downstream 809711 1273374 ~ 1274170 (+) True G2287973

Expression Profile