RNA id: TU2615649


Basic Information

Item Value
RNA id TU2615649
length 869
RNA type TUCP
GC content 0.44
exon number 1
gene id G2287470
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 486793 ~ 487661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccattgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctctgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcaccatgaagaacaaggaacacaccaggcaggtccgagatattgttgtgaagaagtttaaagccggatttggttacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtggtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaacaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaacctgatggagtctgcaaaagacctgagactggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615645 lncRNA upstream 188 485396 ~ 486605 (+) True G2287469
TU2615635 lncRNA upstream 3336 483183 ~ 483457 (+) True G2287466
TU2615630 lncRNA upstream 3902 482560 ~ 482891 (+) True G2287464
TU2615622 lncRNA upstream 15158 471322 ~ 471635 (+) True G2287456
TU2615619 lncRNA upstream 18206 468146 ~ 468587 (+) True G2287453
TU2615653 lncRNA downstream 11733 499394 ~ 549250 (+) True G2287473
TU2615662 lncRNA downstream 70244 557905 ~ 575122 (+) True G2287482
TU2615681 lncRNA downstream 88755 576416 ~ 577121 (+) True G2287501
TU2615640 lncRNA downstream 97698 585359 ~ 587155 (+) True seh1l
TU2615710 lncRNA downstream 154612 642273 ~ 642542 (+) True G2287528
XR_005041349.1 mRNA upstream 4636 476233 ~ 482157 (+) False psmg2
XM_036971454.1 mRNA upstream 4636 476242 ~ 482157 (+) True psmg2
XM_036971456.1 mRNA upstream 5958 476232 ~ 480835 (+) False psmg2
XM_036971455.1 mRNA upstream 6015 476232 ~ 480778 (+) False psmg2
XM_021559712.2 mRNA upstream 6226 476232 ~ 480567 (+) False psmg2
XM_021559715.2 mRNA downstream 77463 565124 ~ 587159 (+) False seh1l
XR_005041297.1 mRNA downstream 77463 565124 ~ 587159 (+) False seh1l
XM_021559717.2 mRNA downstream 109101 596762 ~ 616427 (+) False rnmt
XM_021559716.2 mRNA downstream 109624 597285 ~ 616427 (+) True rnmt
XM_036971021.1 mRNA downstream 250960 738621 ~ 899937 (+) True rims2b
TU2615343 other upstream 246153 233742 ~ 240640 (+) True rpl30
TU2616270 other downstream 785713 1273374 ~ 1274170 (+) True G2287973
TU2617170 other downstream 1721461 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 1721787 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 1721787 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 1834213 2321874 ~ 2324182 (+) True G2288669

Expression Profile