RNA id: TU2615714


Basic Information

Item Value
RNA id TU2615714
length 261
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2287532
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 650106 ~ 650366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatactacctgcagctaatggggaaccattataaatacagatacaaatactacctgcagctaatggggatccattataaatacagatacaaatactacctgcagctaatggggatccattataaatacagatacaaatactacctgcagctaatggggatccattataaatacagatacaaataccacctgcagctaatggggatccattataaatacaggtacaaatactacctgcagctaatggggatccattataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2615711 lncRNA upstream 2613 646227 ~ 647493 (+) True G2287529
TU2615710 lncRNA upstream 7564 642273 ~ 642542 (+) True G2287528
TU2615640 lncRNA upstream 62951 585359 ~ 587155 (+) True seh1l
TU2615681 lncRNA upstream 72985 576416 ~ 577121 (+) True G2287501
TU2615662 lncRNA upstream 74984 557905 ~ 575122 (+) True G2287482
TU2615720 lncRNA downstream 38983 689349 ~ 689598 (+) True G2287538
TU2615721 lncRNA downstream 39675 690041 ~ 690241 (+) True G2287539
TU2615724 lncRNA downstream 46246 696612 ~ 696875 (+) True G2287542
TU2615725 lncRNA downstream 47870 698236 ~ 698502 (+) True G2287543
TU2615735 lncRNA downstream 56087 706453 ~ 707885 (+) True G2287545
XM_021559717.2 mRNA upstream 33679 596762 ~ 616427 (+) False rnmt
XM_021559716.2 mRNA upstream 33679 597285 ~ 616427 (+) True rnmt
XM_021559715.2 mRNA upstream 62947 565124 ~ 587159 (+) False seh1l
XR_005041297.1 mRNA upstream 62947 565124 ~ 587159 (+) False seh1l
XM_036971454.1 mRNA upstream 167949 476242 ~ 482157 (+) True psmg2
XM_036971021.1 mRNA downstream 88255 738621 ~ 899937 (+) True rims2b
XM_021559723.2 mRNA downstream 285956 936322 ~ 962116 (+) False LOC110487806
XM_021559722.2 mRNA downstream 285962 936328 ~ 962116 (+) True LOC110487806
XM_036971390.1 mRNA downstream 630567 1280933 ~ 1361298 (+) True ncaldb
XM_036971668.1 mRNA downstream 949984 1600350 ~ 1639573 (+) True LOC110511936
TU2615649 other upstream 162445 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 162555 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 162624 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 162715 486793 ~ 487391 (+) False G2287470
TU2615343 other upstream 409466 233742 ~ 240640 (+) True rpl30
TU2616270 other downstream 623008 1273374 ~ 1274170 (+) True G2287973
TU2617170 other downstream 1558756 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 1559082 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 1559082 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 1671508 2321874 ~ 2324182 (+) True G2288669

Expression Profile