RNA id: TU2616506


Basic Information

Item Value
RNA id TU2616506
length 205
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2288159
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1471965 ~ 1472169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtttggcTAATGGTCACTATCCTCCCTTCTCTAATTTGTTTAAGTGAGCACCTGGGCTTTTCAATGCTGTGTGTAAATGGAGTTGCTAAATAAATACAGGTGGGGTCCTCTTGCAAAGAGCAGAGCATGCATGGCATTCCCTCAACAACAGTCACAAATGGATTAGGGTTAATGCTGCGAACCCACAACactgagagaaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2616425 lncRNA upstream 308 1471443 ~ 1471657 (+) True G2288090
TU2616405 lncRNA upstream 29277 1441921 ~ 1442688 (+) True G2288073
TU2616370 lncRNA upstream 67269 1394926 ~ 1404696 (+) False G2288041
TU2616369 lncRNA upstream 71030 1394536 ~ 1400935 (+) True G2288040
TU2616521 lncRNA downstream 17523 1489692 ~ 1491162 (+) True G2288169
TU2616532 lncRNA downstream 23938 1496107 ~ 1496390 (+) True G2288175
TU2616547 lncRNA downstream 35692 1507861 ~ 1523487 (+) False G2288190
TU2616551 lncRNA downstream 35692 1507861 ~ 1536232 (+) False G2288190
TU2616561 lncRNA downstream 47249 1519418 ~ 1550796 (+) True G2288195
XM_036971390.1 mRNA upstream 110667 1280933 ~ 1361298 (+) True ncaldb
XM_021559723.2 mRNA upstream 509849 936322 ~ 962116 (+) False LOC110487806
XM_021559722.2 mRNA upstream 509849 936328 ~ 962116 (+) True LOC110487806
XM_036971021.1 mRNA upstream 572028 738621 ~ 899937 (+) True rims2b
XM_021559716.2 mRNA upstream 855538 597285 ~ 616427 (+) True rnmt
XM_036971668.1 mRNA downstream 128181 1600350 ~ 1639573 (+) True LOC110511936
XM_036970971.1 mRNA downstream 239386 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA downstream 239386 1711555 ~ 1825118 (+) True fam91a1
XM_021559728.2 mRNA downstream 377291 1849460 ~ 1851250 (+) True lratd2a
XM_036971822.1 mRNA downstream 420421 1892590 ~ 1893952 (+) True LOC118946536
TU2616270 other upstream 197795 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 984304 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 984414 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 984483 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 984574 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 736953 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 737279 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 737279 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 849705 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 908278 2380447 ~ 2381395 (+) True G2288814

Expression Profile