RNA id: TU2616547


Basic Information

Item Value
RNA id TU2616547
length 4386
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id G2288190
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1507861 ~ 1556943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtccaataaataacacactaccctgtccaataaataacacactaccgtgtccaataaataacacactacagtGTCCAATAAatgacacactaccctcccctgtccaataaataacacactaccctgtccaataaataacacactacccggtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctcccctgtccaataaataacacactaccctgtccaataaataacacactaccctcccctgtccaataaattacacactaccctgtccaataaataacacactaccctcccctgtccaataaataagacactaccctgtccaataaataacacactaccctcccctgtccaataaataacacactaccctgtccaataaataacacactaccgtgtccaataaataacacactacaaGGTCCAATAAAtgacacactaccctgtccaataaataacacactaccctccactgtccaataaataacatactaacctgtccaataaataacacgctacgctgtccaataaataacacgctaccctgtccaataaataacacactaccctcccctgtccaataaataacacactaccctgtccaataaataacacactacaatgtccaataaataacacgctaccctgtccaataaataagacgctaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacgctaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacaagctaccctcccctgtccaataaataacacactaccctgtccaataaatttcacactaccctcccctgtccaataaataacacactaccctccccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacgctaccctgtccaataaataacacgctaccctgtccaataaataacacgctaccctgtccaataaataacacactaccctgtccaataaataacacattaccctgtccaataaatttcacactaccctcccctgtccaataaataacacgctaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacgctaccctgtccaataaataacacgctaccctgtccaataaataacacgctaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacgctaccctgtccaataaataacacgctacaatgtccaataaataacacactaccctcccctgtccaataaataacacactactttcccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacgctacactgtccaataaataacacgctaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaataaataacacactaccctgtccaatgaacacactacactgtccaataaataacacactaacCTTtccttatgacagaccagctagatctactgtctctattattttatgacagaccaggtagatctactgtctctattatattatgacagaccagctagatctactgtgtctattatattatgacagactagctagatctactgtctctgttatattatgacagaccagatagatctattgtctctattatattatgacagaccagctagatctactgtgtctattatattatgacagaccagctagatctactgtgtctattatattatgacagacaggtcgatctgctgtctctattatattatgacagaccagctagatctaccgtgtctattataatatgacagaccagctagatctactgtgtctattatattttgacagaccagctagatctactgtctctattatataatgacagaccagctagatctaatgtatctattataatacgacataccagctagatctactgtctatattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctattgtattatgatagaccagctacatcaactgtctctattatattatgacagaccagctagatctactgtgtctattataatatgacagaccaactagatctactgtctatattataacatgatattccagctctTTCTACTGGctctataatttgacagaccagctagatctactgtctctataatattatgacagaccagctcgatctgctgtctctattatattatgacagaccaactcgatctgctgtatctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctaccatctctattataatttgacagaccagctagatctattgtctctattatataatgacagacgagatggatctactgtctctattatattatgacagaccagctcgatctgctgtctctattatattatgacagaccagctagatcgactgtttctattatattatgacagaccagctagatctactgtctctattatgatttgtcagacgagctagatctaccgtctatactacaacatgatattccagctagatctactgtctctattataatatgacaatccagctagatctactggctctattataatttgacagaccagctagatcaactgtctctattatattatgacagaccagctagatctactgtctctattatgttatgacagaccagctagatctactgtctctattataatatgacagaccaactaaatctactgtctatattataacatgatattccagctctTTCTACTGGctctataatttgacagaccagctagatctactgtctctattatattatgacagaccagctcgatctgctgtctctattatattataacagaccaactcgatctgctgtatctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctaccatctctattataatttgacagaccagctagatctactgtctctattaaattatgacagagaagctagatctactgtctctattataatatgacaatccagctagatctactgtctccattataacatgacagacacactagatctacagtctatattataacatgatattccagctagatctactgtctctattataatatgacaatccagctagaactactgtctcgattataatatgacagaccagctagatctaccgtctctattataatttgacagaccagctagatctactgtgtctattatattatgacagaccagctcgatctgctgtctctattatattatgacagaccagctagatctaccgtgtctattataatactacagaccagatagatctactgtatctctattatattatgacagaccagctagatctactgtctctattgtattatgatagaccagctagatctactgtctctattatattatgacagaccaggtagatctactatctctagtatattatgtcagaccagctagatctactgtctctattatattatgacggacaagctagatctagtgtctgtattaaattacgacagaccagctagacctactgtcgcttttataatatgacagaccagctagatctactgtgtctattataatatgacagaccaactaaatctactgtctatattataacatgatattccagctctTTCTACTGGctctataatttgacagaccagctagatctactgtctctattatattatgacagaccagctcgatctgctgtatctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatctaccatctctattataatttgacagaccagctagatctactgtctctattataatatgacaatccagctagatctactgtctctattatgttatgacagaccagctagatctactgtctatattataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2616532 lncRNA upstream 11471 1496107 ~ 1496390 (+) True G2288175
TU2616521 lncRNA upstream 16699 1489692 ~ 1491162 (+) True G2288169
TU2616506 lncRNA upstream 35692 1471965 ~ 1472169 (+) True G2288159
TU2616425 lncRNA upstream 36204 1471443 ~ 1471657 (+) True G2288090
TU2616405 lncRNA upstream 65173 1441921 ~ 1442688 (+) True G2288073
TU2616558 lncRNA downstream 13863 1537350 ~ 1561122 (+) False G2288193
TU2616559 lncRNA downstream 13863 1537350 ~ 1539451 (+) True G2288193
TU2616555 lncRNA downstream 17336 1540823 ~ 1563864 (+) False G2288192
TU2616568 lncRNA downstream 23616 1547103 ~ 1548596 (+) True G2288201
TU2616556 lncRNA downstream 26955 1550442 ~ 1553389 (+) True G2288192
XM_036971390.1 mRNA upstream 146563 1280933 ~ 1361298 (+) True ncaldb
XM_021559723.2 mRNA upstream 545745 936322 ~ 962116 (+) False LOC110487806
XM_021559722.2 mRNA upstream 545745 936328 ~ 962116 (+) True LOC110487806
XM_036971021.1 mRNA upstream 607924 738621 ~ 899937 (+) True rims2b
XM_021559716.2 mRNA upstream 891434 597285 ~ 616427 (+) True rnmt
XM_036971668.1 mRNA downstream 76863 1600350 ~ 1639573 (+) True LOC110511936
XM_036970971.1 mRNA downstream 188068 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA downstream 188068 1711555 ~ 1825118 (+) True fam91a1
XM_021559728.2 mRNA downstream 325973 1849460 ~ 1851250 (+) True lratd2a
XM_036971822.1 mRNA downstream 369103 1892590 ~ 1893952 (+) True LOC118946536
TU2616270 other upstream 233691 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1020200 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1020310 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1020379 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1020470 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 685635 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 685961 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 685961 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 798387 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 856960 2380447 ~ 2381395 (+) True G2288814

Expression Profile