RNA id: TU2616675


Basic Information

Item Value
RNA id TU2616675
length 250
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G2288250
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1692390 ~ 1692639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCAGTCTGGATCTTCGATCCACAGCCTCCAGGCAGAGAGTCTGTATCTTGGGGAATCAGAAAAAGCTCAGTCACAAAAAAGCTTAAACAATATCCTCCTCACAGTCACAAATGTAACTTCAGCAAACGCGTTAAAGTTTCAGAGTGCGCATGGAGAAGAGGTTCTGTGAGGTTTCGGATCTGTGCCTGCCTATGTTAGTTGGCTTGCCATGAGGCCACTGCGTACATTCCTGCTGCTAATAATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2616674 lncRNA upstream 2826 1689262 ~ 1689564 (+) True G2288249
TU2616671 lncRNA upstream 15242 1676913 ~ 1677148 (+) True G2288246
TU2616667 lncRNA upstream 17023 1674828 ~ 1675367 (+) False G2288245
TU2616668 lncRNA upstream 17023 1674828 ~ 1675367 (+) False G2288245
TU2616670 lncRNA upstream 17023 1674828 ~ 1675367 (+) True G2288245
TU2616693 lncRNA downstream 5756 1698395 ~ 1698604 (+) True G2288268
TU2616749 lncRNA downstream 38733 1731372 ~ 1732667 (+) True G2288305
TU2616755 lncRNA downstream 52664 1745303 ~ 1745659 (+) True G2288311
TU2616736 lncRNA downstream 90104 1782743 ~ 1783505 (+) True G2288293
TU2616711 lncRNA downstream 95628 1788267 ~ 1829444 (+) False G2288283
XM_036971668.1 mRNA upstream 52817 1600350 ~ 1639573 (+) True LOC110511936
XM_036971390.1 mRNA upstream 331092 1280933 ~ 1361298 (+) True ncaldb
XM_021559723.2 mRNA upstream 730274 936322 ~ 962116 (+) False LOC110487806
XM_021559722.2 mRNA upstream 730274 936328 ~ 962116 (+) True LOC110487806
XM_036971021.1 mRNA upstream 792453 738621 ~ 899937 (+) True rims2b
XM_036970971.1 mRNA downstream 18916 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA downstream 18916 1711555 ~ 1825118 (+) True fam91a1
XM_021559728.2 mRNA downstream 156821 1849460 ~ 1851250 (+) True lratd2a
XM_036971822.1 mRNA downstream 199951 1892590 ~ 1893952 (+) True LOC118946536
XM_021559745.2 mRNA downstream 516380 2209019 ~ 2255119 (+) False triqk
TU2616270 other upstream 418220 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1204729 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1204839 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1204908 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1204999 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 516483 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 516809 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 516809 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 629235 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 687808 2380447 ~ 2381395 (+) True G2288814

Expression Profile