RNA id: TU2616736


Basic Information

Item Value
RNA id TU2616736
length 243
lncRNA type intronic
GC content 0.30
exon number 2
gene id G2288293
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1782743 ~ 1783505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactatattactatactactatatcactatactactatatcactataatactatatcactacactactatatcactacactactatatcactgtaacactatactactatatcaccacactactatatcaccacactactatatcaccacactactatatcactgcactactatatcactatactactatatcaccacactactatatcactatactactatatcactatactactatatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2616755 lncRNA upstream 37084 1745303 ~ 1745659 (+) True G2288311
TU2616749 lncRNA upstream 50076 1731372 ~ 1732667 (+) True G2288305
TU2616693 lncRNA upstream 84139 1698395 ~ 1698604 (+) True G2288268
TU2616675 lncRNA upstream 90104 1692390 ~ 1692639 (+) True G2288250
TU2616674 lncRNA upstream 93179 1689262 ~ 1689564 (+) True G2288249
TU2616711 lncRNA downstream 4762 1788267 ~ 1829444 (+) False G2288283
TU2616716 lncRNA downstream 4762 1788267 ~ 1829444 (+) False G2288283
TU2616717 lncRNA downstream 4762 1788267 ~ 1829444 (+) False G2288283
TU2616720 lncRNA downstream 4762 1788267 ~ 1829444 (+) False G2288283
TU2616712 lncRNA downstream 6483 1789988 ~ 1829444 (+) False G2288283
XM_036971668.1 mRNA upstream 143170 1600350 ~ 1639573 (+) True LOC110511936
XM_036971390.1 mRNA upstream 421445 1280933 ~ 1361298 (+) True ncaldb
XM_021559723.2 mRNA upstream 820627 936322 ~ 962116 (+) False LOC110487806
XM_021559722.2 mRNA upstream 820627 936328 ~ 962116 (+) True LOC110487806
XM_036971021.1 mRNA upstream 882806 738621 ~ 899937 (+) True rims2b
XM_021559728.2 mRNA downstream 65955 1849460 ~ 1851250 (+) True lratd2a
XM_036971822.1 mRNA downstream 109085 1892590 ~ 1893952 (+) True LOC118946536
XM_021559745.2 mRNA downstream 425514 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA downstream 425576 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA downstream 425912 2209417 ~ 2255119 (+) False triqk
TU2616270 other upstream 508573 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1295082 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1295192 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1295261 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1295352 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 425617 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 425943 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 425943 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 538369 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 596942 2380447 ~ 2381395 (+) True G2288814

Expression Profile