RNA id: TU2616725


Basic Information

Item Value
RNA id TU2616725
length 2530
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2288283
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1788267 ~ 1829444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAAATGTCACAGTGAGACTGGTGTAATGCTCTTCTCTTCTATAGCCTATGGATCCATCATACAGCATGTTGACTCAACCCTGTTCCCTTTTCAACCTAGTTTACTTTCAACCATAAAGgtattgttgttgtttgtgtcatgaTTCCCCAAGGTGCAGTTCACTCTATCAGCCAGTAGTAGTTGGTGTTTTGTTCAGGAACTGGACGCCGGTCTGTTGGTTGGTTGGGGGGGTTTAGATCAACCTCGGATCAGAGGAGAGATTGACCTGAGCTAGCTACCCGCCCCCCACTGCTTATgcaaaacatttctctctctgtttgactgaGGGAACACCAAAGACCACATTTTTCTTTGGGTTtttatttatctttttttttttgtcttttatttgtatttttctatCTTATTATTATGACATCATCCTCTGTCATGCCCAGTAGACTTCTATATCTTTATCTCTGGCCCCCGTCCTGTACAGACAGGGCACTCCACTCCCTCGGCCAGTTTAAGATCTCTGTTTACAGCGACGGCTAGTGTTACTTAGTGACGGCGTCAATGCTGGTTCAGACCTACCTGGGTTAAACTAGTATCTGTTTTCTTTATGCCTGGCTGGAGTAACCAGATGGGTTTTTTGAGACTGTTGTCATTGGTTCCActgtgccaggcaagctcaataaaGCACAGCTCAAATATTCAAAGAAATGTAAtactgtttgaacccaggtctgcttggGTTATCCAAACAGCACcaaagcagtagcagtagtagtagtagtagtagtagtagtagtagtagtagtaacagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtagtagtaacagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtaacagtagtagtagtagtagtagtagcagtagtagtagtagtagtagtagcagtagcagtagtagtagtagtagtagttgcagtagtagtagtagtagtagtagcagtagtagtagtagtagtagtagcagtagtagtagcagtagtagtagtagtagcagtagtagtagcagtagtagtactagtagcagtagtagtagtagcagtagtagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtagtagtaacagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtagtagtagttagtagtagtagtaacagtagcagcagtagtagtagtagtagtagtagtagtaacagtagtagtagtagtaacagtagcagcagtagtagtagtagtagtaacagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagcagtagcagcagcagactCATTAGTACACTCTTAATAGTCGTACTCtgttctatctttctctctttttatttGGATGGATGTGTTCTGTCCCCCCATTTTGACCCCATAGTGGTTGTTTATTGTTGTTGATGACGATGTAGAAAAAAAGATTATCAAGAGGTCCTGGTGAAGCATGATGAGTGTGTAGAGACCATTGTCTGTGTGTTTTCACCATCACCTCATCAACCTACCCAATACCTCCTGCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATCGATCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATTGATGGATTGATCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATTGATCTATTATCGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATTGATCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATTGATCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATTGATCTATTATTGACCCCTACCTTCCATAACTAGTCTCCTATCGATGGATTGATCTATTATTGACCCCTACCTTCCATGACTAGTCTCCTATCGATGGATTTATCTATTATTGACCCCTACCTTCCATGACTAGTCTCCTATCGATGGATCGATCTATTATCGACCCCTACCTTCCATAACTAGTCACCTATCGATCTATCCGACCCCTATCTGTCTGGTAGCCTGTTATCAATCAGTcccaaccccctccctccatgcctcacTCCTAACCTCCACAGTGTTATAGAGGTACCAATAGTTTTATATAATGTCAACCTTGCGTTTTAGGAGTCTTTGTTGTAGCTTGTTTAATGGGACTGAATAATAATATTGATGCTGTTGTATTTTATTAAGTAGGTACAAAACGTGACATTCCTCCACTTTTTCTTCACTGTCCTGAGATATGTGTTCTGATTATTACAAAATGAAATGTAAAAAGTataaataaatatgtaataataaaataaatggaaCATCCTACCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2616736 lncRNA upstream 43210 1782743 ~ 1783505 (+) True G2288293
TU2616755 lncRNA upstream 81056 1745303 ~ 1745659 (+) True G2288311
TU2616749 lncRNA upstream 94048 1731372 ~ 1732667 (+) True G2288305
TU2616693 lncRNA upstream 128111 1698395 ~ 1698604 (+) True G2288268
TU2616675 lncRNA upstream 134076 1692390 ~ 1692639 (+) True G2288250
TU2616784 lncRNA downstream 13898 1843342 ~ 1848514 (+) False G2288334
TU2616789 lncRNA downstream 14275 1843719 ~ 1845066 (+) True G2288335
TU2616787 lncRNA downstream 15642 1845086 ~ 1848514 (+) True G2288334
TU2616790 lncRNA downstream 17368 1846812 ~ 1848257 (+) False G2288336
TU2616791 lncRNA downstream 18191 1847635 ~ 1848257 (+) True G2288336
XM_036970971.1 mRNA upstream 1597 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA upstream 1597 1711555 ~ 1825118 (+) True fam91a1
XM_036971668.1 mRNA upstream 187142 1600350 ~ 1639573 (+) True LOC110511936
XM_036971390.1 mRNA upstream 465417 1280933 ~ 1361298 (+) True ncaldb
XM_021559722.2 mRNA upstream 864599 936328 ~ 962116 (+) True LOC110487806
XM_021559728.2 mRNA downstream 20016 1849460 ~ 1851250 (+) True lratd2a
XM_036971822.1 mRNA downstream 63146 1892590 ~ 1893952 (+) True LOC118946536
XM_021559745.2 mRNA downstream 379575 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA downstream 379637 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA downstream 379973 2209417 ~ 2255119 (+) False triqk
TU2616270 other upstream 552545 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1339054 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1339164 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1339233 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1339324 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 379678 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 380004 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 380004 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 492430 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 551003 2380447 ~ 2381395 (+) True G2288814

Expression Profile