RNA id: TU2617177


Basic Information

Item Value
RNA id TU2617177
length 268
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2288617
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2167140 ~ 2167407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaaCCAGGACCCATAtggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaaccaggacccatagggaatagggcactactttacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617175 lncRNA upstream 963 2165969 ~ 2166177 (+) True G2288615
TU2617159 lncRNA upstream 25769 2141160 ~ 2141371 (+) True G2288601
TU2617147 lncRNA upstream 42484 2124452 ~ 2124656 (+) True G2288590
TU2617143 lncRNA upstream 46389 2120547 ~ 2120751 (+) True G2288586
TU2617120 lncRNA upstream 62027 2104768 ~ 2105113 (+) True G2288564
TU2617190 lncRNA downstream 18688 2186095 ~ 2186310 (+) True G2288629
TU2617193 lncRNA downstream 21503 2188910 ~ 2189132 (+) True G2288632
TU2617173 lncRNA downstream 42669 2210076 ~ 2256030 (+) True G2288613
TU2617220 lncRNA downstream 85535 2252942 ~ 2253405 (+) True G2288655
TU2617228 lncRNA downstream 95702 2263109 ~ 2268821 (+) True G2288660
XM_036971822.1 mRNA upstream 273188 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 315890 1849460 ~ 1851250 (+) True lratd2a
XM_036970971.1 mRNA upstream 342022 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA upstream 342022 1711555 ~ 1825118 (+) True fam91a1
XM_036971668.1 mRNA upstream 527567 1600350 ~ 1639573 (+) True LOC110511936
XM_021559745.2 mRNA downstream 41612 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA downstream 41674 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA downstream 42010 2209417 ~ 2255119 (+) False triqk
XM_036970991.1 mRNA downstream 357652 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 357652 2525059 ~ 2686032 (+) False cbfa2t2
TU2616270 other upstream 892970 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1679479 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1679589 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1679658 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1679749 486793 ~ 487391 (+) False G2287470
TU2617170 other downstream 41715 2209122 ~ 2255073 (+) False triqk
TU2617169 other downstream 42041 2209448 ~ 2255073 (+) False triqk
TU2617171 other downstream 42041 2209448 ~ 2255073 (+) True triqk
TU2617238 other downstream 154467 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 213040 2380447 ~ 2381395 (+) True G2288814

Expression Profile