RNA id: TU2617220


Basic Information

Item Value
RNA id TU2617220
length 416
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2288655
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2252942 ~ 2253405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctttCCAGATGTTTGTCATCCCTCTCTTTATAAATCCATGTGGTCTTTGTACCTTAACTTTAGGCACGACAGTTTAACTAAACTCATGAGGGATCTATGGGTTGTATTTTTCAACAATCAttggatatacactgagtgtacaatgCATTAGgcacaccttcctaatatggagttgcacccccttaccgccccttttgccctcagaacagtctcaatttgtcggggcatggactctacaaggtgtcgatagcgtcccacagggatgctgtcccaagttgactccaatgtttcccacagttgtgtcaagatgactagatgttctttgggtggtggaccattcttgattcaacagtttcccatgtgtatgtGTAAAAccaagcagcgttgcagttcttgacacactcaaaccggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617193 lncRNA upstream 63810 2188910 ~ 2189132 (+) True G2288632
TU2617190 lncRNA upstream 66632 2186095 ~ 2186310 (+) True G2288629
TU2617177 lncRNA upstream 85535 2167140 ~ 2167407 (+) True G2288617
TU2617175 lncRNA upstream 86765 2165969 ~ 2166177 (+) True G2288615
TU2617159 lncRNA upstream 111571 2141160 ~ 2141371 (+) True G2288601
TU2617228 lncRNA downstream 9704 2263109 ~ 2268821 (+) True G2288660
TU2617240 lncRNA downstream 32389 2285794 ~ 2286419 (+) True G2288671
TU2617255 lncRNA downstream 41779 2295184 ~ 2297611 (+) False G2288677
TU2617257 lncRNA downstream 41779 2295184 ~ 2297611 (+) False G2288677
TU2617258 lncRNA downstream 41779 2295184 ~ 2297611 (+) False G2288677
XM_036971822.1 mRNA upstream 358990 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 401692 1849460 ~ 1851250 (+) True lratd2a
XM_036970971.1 mRNA upstream 427824 1711555 ~ 1825118 (+) False fam91a1
XM_036970972.1 mRNA upstream 427824 1711555 ~ 1825118 (+) True fam91a1
XM_036971668.1 mRNA upstream 613369 1600350 ~ 1639573 (+) True LOC110511936
XM_036970991.1 mRNA downstream 271654 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 271654 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 271654 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 271654 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 513280 2766685 ~ 2800192 (+) True pip4p2
TU2616270 other upstream 978772 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1765281 486793 ~ 487661 (+) True G2287470
TU2615648 other upstream 1765391 486793 ~ 487551 (+) False G2287470
TU2615647 other upstream 1765460 486793 ~ 487482 (+) False G2287470
TU2615646 other upstream 1765551 486793 ~ 487391 (+) False G2287470
TU2617238 other downstream 68469 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 127042 2380447 ~ 2381395 (+) True G2288814
TU2618062 other downstream 807037 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 2195484 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2293499 4546904 ~ 4548603 (+) False G2290455

Expression Profile