RNA id: TU2617259


Basic Information

Item Value
RNA id TU2617259
length 2248
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G2288677
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2295184 ~ 2297611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtacaggagggggctgagaacgcacccttgtggggccccagtgttcaggatcagcgaagtggagatgttgtttcctactttcaccacctgggggcagcccgtcagaaagtcagccagttgcatagggaggagttcagacccAAGTCCTCCAGCTTAATGATGAACTTGAAGGGCACTgttgtgttgaaggctgagctgtagtcaatgaacagcattcttacaaaggtattcctcttgtccagatgggatagggcagtgggcagtgcgatggtgattgcatcatctatggacctatttgggcggtaagcaaattggagtgggtctagggtgtcaggtagggtggaagtgatatgatccttgactagtctctcaaagcacttcatgatgacagaagtgagtgttacggggtggtggtcatttagttcagttaccttagcctTCTTGGGTATAGGAACAATGGTtgtcatcttgaagcatgtggggacaacagactgggatagggagagattgaatatgtccgtaaacacaccagccagctggtctgcgcatgctctgaggacgcggctggggatgccgtctggggaagcagccttgcgagggttaaagccacggagaaagagagcggggcgcagtccttgttagcgggccgagacagtggcactgtattatcctcatagcgggcaaagaaggtgtttagtttgtctggaagtgtgACCTTGGTGTCCGTGACATAGCTGATTGTCTGTAgaacctgccacatacgtctcgtgtctgagctgtggaactgcgactccactttgtctctatactgacgttttgcctgtttgattgccttatggagggaataactaaactatttatattcagccatatgcccagacctctttccatggttaaatgcggtggttcacgctttcagttttgcgcgaaaaaccgccatccatccacgttttcaggttagggcaggttttaatagtcacagtgagtACAACATCTCCAATAAACTTCCTTATAAATTCACTCACTGAGTCAGTGTATAGGTtgatgttattctctgaggctgactGGAGGGAAAAGGAACCGTTTGGGACACAACCCTAATGTATTACTTTTCATCTGGGGCCCTGGTCGTAGTGAATAGGGACCGTTGGGGACACCACAACCCTAATGTATTACTTTTCATCTGGGCCCCTGGTCGTAGGAGTGAATAGGGACCGTTTGGGGACACCACAACCCTAATGTATGATGGAGTACTCATAACTCAATACATGTTATTATGAGAACTTGGTAGTGTGGGATATTGAGACAGAATTATTAAACCCAAGGTACACACACTGAAATCCCTGCAGATTTTAGAATCAATATTGCTGAGGTCCTCAAGGAGGCTTCTGGGTTACAATATCAGCAACACGTCACTAATGGGAATAACAGACCATTGAAAGAGTTCATTAGGTTGAATAAGATGAGATGTTGCCTGCCCTACCAAGTGACAAGTTTAGCCTGgtttgtgtgtgcatttgtgcgtACCTTTCTGCAATGTCTGTGTGCCCCCCCCGTACACTCCTCATACAGCCCAGCCTGGCAGATGGCTCCCCTGTCCTGCTTGCCAGGAAAAGCATGTGAATTAAAGGTTATACCCACCAGGTTTGAAGTGCTGCCAACTCCGGCTCAGCTCCGGCTCAGCTCCAGCTCAGCTCCGATCGGTGCATCAGCCCCAGCAGCCTCGGCCCACCTGCCTGTCAGCCCCGAGACATCTGGCTCCATGAGCGTGGAATGAGCATGGTGCTGTGAGGAATCACTGTCATCTGTTCAGTTCAGCAGTCTGTCTGAGAATAcacgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagctgctcTACTACAACGTCCTGAATATTCACTGCGTTTGAAAAATACCTGATACATTTCCTCCTCTTCAACTGGACTTCACATAAAACTCCCTGTAATTCAAGTCGACTCCTAGCTAGAATACTGGACCACCAGGGTTGTAATTCAGGTCGTCTCCTCGCTAGAACCCTGGACCACCAGGGTTGTAATTCAGGTCGTCTCCTCGCTAGAACACTGAACCATCAGGGTAGTAATTCAGGTCGACTCCTAGCTAGAGCCCTGGACCACCAGGGTAGTAATTCAGGTCGTCTCCAAGCTAGAGCCCTGGACCACCAGGGTAGTAATTCAGGTCGTCTCCTCGCTAGAGCCCAGGACCACCAGGGTAGTAATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617240 lncRNA upstream 8765 2285794 ~ 2286419 (+) True G2288671
TU2617228 lncRNA upstream 26363 2263109 ~ 2268821 (+) True G2288660
TU2617173 lncRNA upstream 39154 2210076 ~ 2256030 (+) True G2288613
TU2617220 lncRNA upstream 41779 2252942 ~ 2253405 (+) True G2288655
TU2617193 lncRNA upstream 106052 2188910 ~ 2189132 (+) True G2288632
TU2617271 lncRNA downstream 22547 2320158 ~ 2321176 (+) True G2288688
TU2617366 lncRNA downstream 28964 2326575 ~ 2327102 (+) True G2288773
TU2617371 lncRNA downstream 32373 2329984 ~ 2330629 (+) True G2288777
TU2617376 lncRNA downstream 34381 2331992 ~ 2332296 (+) True G2288780
TU2617383 lncRNA downstream 47184 2344795 ~ 2345024 (+) True G2288787
XM_021559745.2 mRNA upstream 40065 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 40065 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 40065 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 401232 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 443934 1849460 ~ 1851250 (+) True lratd2a
XM_036970991.1 mRNA downstream 227448 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 227448 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 227448 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 227448 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 469074 2766685 ~ 2800192 (+) True pip4p2
TU2617170 other upstream 40111 2209122 ~ 2255073 (+) False triqk
TU2617169 other upstream 40111 2209448 ~ 2255073 (+) False triqk
TU2617171 other upstream 40111 2209448 ~ 2255073 (+) True triqk
TU2616270 other upstream 1021014 1273374 ~ 1274170 (+) True G2287973
TU2615649 other upstream 1807523 486793 ~ 487661 (+) True G2287470
TU2617238 other downstream 24263 2321874 ~ 2324182 (+) True G2288669
TU2617423 other downstream 82836 2380447 ~ 2381395 (+) True G2288814
TU2618062 other downstream 762831 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 2151278 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2249293 4546904 ~ 4548603 (+) False G2290455