RNA id: TU2617366


Basic Information

Item Value
RNA id TU2617366
length 432
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G2288773
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2326575 ~ 2327102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCtgtaactctgtctgtctgtggaaaCACACTGTCCCTGTAACTCTGTCTGTGgaaacacactgtctctgtaactctgtctGTGGAAACACACTGTCCCTGTAACTCTGTCTGTGGAAACACACTGTCCCtgtaactctgtctgtctgtggaaaCACACTGTCCCtgtaactctgtctgtctTTGGAAACACACTGTCCCTGTAACTCTGTCTGTGgaaacacactgtctctgtaactctgtctGTGGAAACACACTGTCCCtgtaactctgtctgtctgtggaaaCACACTGTCCCtgtaactctgtctgtctgtggagcaCACTGTCCCTGTAACTCTGTCTGTGGAAACACACTGTCCCtgtaactctgtctgtctgtggaaaCACACTGTCCCtgtaactctgtctgtctgtgtcctaaataacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617271 lncRNA upstream 5399 2320158 ~ 2321176 (+) True G2288688
TU2617255 lncRNA upstream 28964 2295184 ~ 2297611 (+) False G2288677
TU2617371 lncRNA downstream 2882 2329984 ~ 2330629 (+) True G2288777
TU2617376 lncRNA downstream 4890 2331992 ~ 2332296 (+) True G2288780
TU2617383 lncRNA downstream 17693 2344795 ~ 2345024 (+) True G2288787
TU2617388 lncRNA downstream 26682 2353784 ~ 2354036 (+) True G2288792
TU2617435 lncRNA downstream 115004 2442106 ~ 2442470 (+) True G2288826
XM_021559745.2 mRNA upstream 71456 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 71456 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 71456 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 432623 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 475325 1849460 ~ 1851250 (+) True lratd2a
XM_036970991.1 mRNA downstream 197957 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 197957 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 197957 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 197957 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 439583 2766685 ~ 2800192 (+) True pip4p2
TU2617238 other upstream 2393 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 71502 2209122 ~ 2255073 (+) False triqk
TU2617169 other upstream 71502 2209448 ~ 2255073 (+) False triqk
TU2617171 other upstream 71502 2209448 ~ 2255073 (+) True triqk
TU2616270 other upstream 1052405 1273374 ~ 1274170 (+) True G2287973
TU2617423 other downstream 53345 2380447 ~ 2381395 (+) True G2288814
TU2618062 other downstream 733340 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 2121787 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2219802 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 2219802 4546904 ~ 4548844 (+) False G2290455

Expression Profile