RNA id: TU2617383


Basic Information

Item Value
RNA id TU2617383
length 230
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2288787
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2344795 ~ 2345024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctagttaagtcaccaagctctccaatgataccagttcctcctagttaagtcaccaagctctccaatgataccagttcctcctagttaagtcaccaagctctccaatgataccagttcctcctagttaagtcaccaagcactccaatgataccagttcctcctagttaagtcaccaagctctccaatgataccagttcctcctagttaagtcaccaagctctccaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617376 lncRNA upstream 12499 2331992 ~ 2332296 (+) True G2288780
TU2617371 lncRNA upstream 14166 2329984 ~ 2330629 (+) True G2288777
TU2617366 lncRNA upstream 17693 2326575 ~ 2327102 (+) True G2288773
TU2617271 lncRNA upstream 23619 2320158 ~ 2321176 (+) True G2288688
TU2617259 lncRNA upstream 47184 2295184 ~ 2297611 (+) False G2288677
TU2617388 lncRNA downstream 8760 2353784 ~ 2354036 (+) True G2288792
TU2617435 lncRNA downstream 97082 2442106 ~ 2442470 (+) True G2288826
TU2617436 lncRNA downstream 97882 2442906 ~ 2443352 (+) True G2288827
TU2617443 lncRNA downstream 106010 2451034 ~ 2451766 (+) True G2288834
TU2617448 lncRNA downstream 109915 2454939 ~ 2455158 (+) True G2288839
XM_021559745.2 mRNA upstream 89676 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 89676 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 89676 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 450843 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 493545 1849460 ~ 1851250 (+) True lratd2a
XM_036970991.1 mRNA downstream 180035 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 180035 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 180035 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 180035 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 421661 2766685 ~ 2800192 (+) True pip4p2
TU2617238 other upstream 20613 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 89722 2209122 ~ 2255073 (+) False triqk
TU2617169 other upstream 89722 2209448 ~ 2255073 (+) False triqk
TU2617171 other upstream 89722 2209448 ~ 2255073 (+) True triqk
TU2616270 other upstream 1070625 1273374 ~ 1274170 (+) True G2287973
TU2617423 other downstream 35423 2380447 ~ 2381395 (+) True G2288814
TU2618062 other downstream 715418 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 2103865 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2201880 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 2201880 4546904 ~ 4548844 (+) False G2290455

Expression Profile