RNA id: TU2617436


Basic Information

Item Value
RNA id TU2617436
length 447
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2288827
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2442906 ~ 2443352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttagctgcctcatcagattgtcagtattttggctgcctcatcagatggtcagtattttggctgcctcatcagatggtcagtattttagctgcctcatcagatggtcagtattttggctgcctcatcagatagtattttggttgcctcatcagatggtcagtattttggctgcctcatcagataggattttggttgcctcatcagatggtaaatattttggctgcctcatcagatagtaggttggttgcctcatcggatggtcagtattttggctgcctcatcagatggttagtattttggctgcctcatcagatggtattttggttgcctcatcagatggtcagtattttggctgcctcatcagatggtcattattttggctgcctcatcagatggtcagtattttagctgcctcatcagattgtcagtattttggctgcctcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617435 lncRNA upstream 436 2442106 ~ 2442470 (+) True G2288826
TU2617388 lncRNA upstream 88870 2353784 ~ 2354036 (+) True G2288792
TU2617383 lncRNA upstream 97882 2344795 ~ 2345024 (+) True G2288787
TU2617376 lncRNA upstream 110610 2331992 ~ 2332296 (+) True G2288780
TU2617371 lncRNA upstream 112277 2329984 ~ 2330629 (+) True G2288777
TU2617443 lncRNA downstream 7682 2451034 ~ 2451766 (+) True G2288834
TU2617448 lncRNA downstream 11587 2454939 ~ 2455158 (+) True G2288839
TU2617513 lncRNA downstream 70151 2513503 ~ 2513739 (+) True G2288898
TU2617548 lncRNA downstream 98174 2541526 ~ 2541915 (+) True G2288912
TU2617551 lncRNA downstream 100849 2544201 ~ 2544731 (+) True G2288915
XM_021559745.2 mRNA upstream 187787 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 187787 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 187787 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 548954 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 591656 1849460 ~ 1851250 (+) True lratd2a
XM_036970991.1 mRNA downstream 81707 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 81707 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 81707 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 81707 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 323333 2766685 ~ 2800192 (+) True pip4p2
TU2617423 other upstream 61511 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 118724 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 187833 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 617090 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 2005537 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2103552 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 2103552 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 2103552 4546904 ~ 4548844 (+) True G2290455

Expression Profile