RNA id: TU2617513


Basic Information

Item Value
RNA id TU2617513
length 237
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2288898
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2513503 ~ 2513739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcgggggatccaatcttgcaaccttacagttaactagtccaaagccataaccacctgcctctcattgcactccacaaggagactgcctgttacgcgaatgcagtaagccaaggaaagttgctagctagcattaaacttgtcttataaaaaacaatcaatcataatcactagttaactacacatggttgatgatattactagatattatctagcgtgtcctgcgttgcatataatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617448 lncRNA upstream 58345 2454939 ~ 2455158 (+) True G2288839
TU2617443 lncRNA upstream 61737 2451034 ~ 2451766 (+) True G2288834
TU2617436 lncRNA upstream 70151 2442906 ~ 2443352 (+) True G2288827
TU2617435 lncRNA upstream 71033 2442106 ~ 2442470 (+) True G2288826
TU2617388 lncRNA upstream 159467 2353784 ~ 2354036 (+) True G2288792
TU2617548 lncRNA downstream 27787 2541526 ~ 2541915 (+) True G2288912
TU2617551 lncRNA downstream 30462 2544201 ~ 2544731 (+) True G2288915
TU2617563 lncRNA downstream 53428 2567167 ~ 2568691 (+) True G2288926
TU2617570 lncRNA downstream 65877 2579616 ~ 2581380 (+) False G2288933
TU2617571 lncRNA downstream 65877 2579616 ~ 2581380 (+) True G2288933
XM_021559745.2 mRNA upstream 258384 2209019 ~ 2255119 (+) False triqk
XM_036971306.1 mRNA upstream 258384 2209081 ~ 2255119 (+) False triqk
XM_036971305.1 mRNA upstream 258384 2209417 ~ 2255119 (+) False triqk
XM_036971822.1 mRNA upstream 619551 1892590 ~ 1893952 (+) True LOC118946536
XM_021559728.2 mRNA upstream 662253 1849460 ~ 1851250 (+) True lratd2a
XM_036970991.1 mRNA downstream 11320 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970992.1 mRNA downstream 11320 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970993.1 mRNA downstream 11320 2525059 ~ 2686032 (+) False cbfa2t2
XM_036970994.1 mRNA downstream 11320 2525059 ~ 2686032 (+) True cbfa2t2
XM_036970805.1 mRNA downstream 252946 2766685 ~ 2800192 (+) True pip4p2
TU2617423 other upstream 132108 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 189321 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 258430 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 546703 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1935150 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 2033165 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 2033165 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 2033165 4546904 ~ 4548844 (+) True G2290455

Expression Profile