RNA id: TU2617982


Basic Information

Item Value
RNA id TU2617982
length 211
lncRNA type intronic
GC content 0.53
exon number 1
gene id G2289256
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2931158 ~ 2931368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagggagagtgtgttggtgaaagagagagggagtgtgttggtgacagagagagggagagtgtgttggtgacagagaaagggagagtgtgttggtgacagagagagggagagtgtgttggtgacagagagagggagagtgtgttggtgacagagagagggagtgtgttggtgacagagagagggagagtgttggtgacagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2617975 lncRNA upstream 3229 2927581 ~ 2927929 (+) True G2289249
TU2617731 lncRNA upstream 21138 2908987 ~ 2910020 (+) True G2289054
TU2617722 lncRNA upstream 29120 2893647 ~ 2902038 (+) False G2289049
TU2617723 lncRNA upstream 30114 2893647 ~ 2901044 (+) True G2289049
TU2617698 lncRNA upstream 52015 2877793 ~ 2879143 (+) True G2289032
TU2617983 lncRNA downstream 9 2931377 ~ 2931593 (+) True G2289257
TU2617986 lncRNA downstream 9035 2940403 ~ 2940634 (+) True G2289260
TU2617987 lncRNA downstream 11145 2942513 ~ 2942843 (+) True G2289261
TU2617981 lncRNA downstream 49941 2981309 ~ 2982463 (+) True G2289255
TU2618001 lncRNA downstream 56692 2988060 ~ 2988400 (+) True G2289273
XM_021559742.2 mRNA upstream 44374 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 85592 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 87280 2816476 ~ 2843878 (+) False LOC110487823
XM_036970805.1 mRNA upstream 130966 2766685 ~ 2800192 (+) True pip4p2
XM_036970994.1 mRNA upstream 245126 2525059 ~ 2686032 (+) True cbfa2t2
XM_036971823.1 mRNA downstream 228850 3160218 ~ 3181800 (+) True LOC118946537
XM_021559746.2 mRNA downstream 2071610 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 2083181 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2364441 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2577633 5509001 ~ 5525069 (+) False LOC110513117
TU2617423 other upstream 549763 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 606976 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 676085 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 129074 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1517521 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1615536 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1615536 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1615536 4546904 ~ 4548844 (+) True G2290455

Expression Profile