RNA id: TU2618048


Basic Information

Item Value
RNA id TU2618048
length 436
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2289311
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3013502 ~ 3013937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagtagagagaatgatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttgcatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaatgtttcaggtgcCTTCCaaaaccttcccacaataagttgggtgaatttttgcccattttgcaagttcctatgccttcctactagatgtcaacagtctttagaaattttttcaggcttgtattcttataaatgagggagtaagagcagtctgaattagtggaccctgccgtgtcacagagcgtTTTCATAAGTGCGAccagagagagtgcctttcttgtttaccttttatattgatgacgttattgtccggtttaaatattatagatcatttaggctaaaaacaacctgaggattgaatataaacatcgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618034 lncRNA upstream 17734 2995543 ~ 2995768 (+) True G2289297
TU2618002 lncRNA upstream 24256 2989008 ~ 2989246 (+) True G2289274
TU2618001 lncRNA upstream 25102 2988060 ~ 2988400 (+) True G2289273
TU2617981 lncRNA upstream 31039 2981309 ~ 2982463 (+) True G2289255
TU2617987 lncRNA upstream 70659 2942513 ~ 2942843 (+) True G2289261
TU2618069 lncRNA downstream 120062 3133999 ~ 3134204 (+) True G2289332
TU2618115 lncRNA downstream 164800 3178737 ~ 3179016 (+) True G2289374
TU2618131 lncRNA downstream 182891 3196828 ~ 3197301 (+) True G2289390
TU2618133 lncRNA downstream 183698 3197635 ~ 3197987 (+) True G2289392
TU2618179 lncRNA downstream 231038 3244975 ~ 3249937 (+) True G2289431
XM_036971624.1 mRNA upstream 21414 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 126718 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 167936 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 169624 2816476 ~ 2843878 (+) False LOC110487823
XM_036970805.1 mRNA upstream 213310 2766685 ~ 2800192 (+) True pip4p2
XM_036971823.1 mRNA downstream 146281 3160218 ~ 3181800 (+) True LOC118946537
XM_021559746.2 mRNA downstream 1989041 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 2000612 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2281872 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2495064 5509001 ~ 5525069 (+) False LOC110513117
TU2617423 other upstream 632107 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 689320 2321874 ~ 2324182 (+) True G2288669
TU2617170 other upstream 758429 2209122 ~ 2255073 (+) False triqk
TU2618062 other downstream 46505 3060442 ~ 3060779 (+) True G2289325
TU2619328 other downstream 1434952 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1532967 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1532967 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1532967 4546904 ~ 4548844 (+) True G2290455

Expression Profile