RNA id: TU2618131


Basic Information

Item Value
RNA id TU2618131
length 474
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2289390
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3196828 ~ 3197301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAAAAATGatgatgatacagtcttatactcaactGTCCCCTCCCCAGATTTTGTTTTAAACTCTCAACAACAAAGTGACCcaacccatcccgttagcgggatcattttcgtcaacatccgctgaattgcagagcgccaaattcaaattaaattactaaaaatatttaattttcatgaaatcacaagtgcaatatagcaaaacacagtttagcttgttgttaacctgttgcgactctaggggcagtattttcatttttggaaaaaaacgttcccgttttaaacgggatattttgtcagtacaagatgctagaatatgcatataattgacaactttggatagaaaacactctaaagtttccaaaactgtaaagatattgtctgtgagtataacagaactgatgttgcaggcgaaagcctgagaaaaatccaatccggaagtgccccatattttgaaagcgctgcgttccaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618115 lncRNA upstream 17812 3178737 ~ 3179016 (+) True G2289374
TU2618069 lncRNA upstream 62624 3133999 ~ 3134204 (+) True G2289332
TU2618048 lncRNA upstream 182891 3013502 ~ 3013937 (+) True G2289311
TU2618034 lncRNA upstream 201060 2995543 ~ 2995768 (+) True G2289297
TU2618002 lncRNA upstream 207582 2989008 ~ 2989246 (+) True G2289274
TU2618133 lncRNA downstream 334 3197635 ~ 3197987 (+) True G2289392
TU2618179 lncRNA downstream 47674 3244975 ~ 3249937 (+) True G2289431
TU2618181 lncRNA downstream 54639 3251940 ~ 3252205 (+) True G2289433
TU2618184 lncRNA downstream 77382 3274683 ~ 3275184 (+) True G2289436
TU2618189 lncRNA downstream 81648 3278949 ~ 3279167 (+) True G2289440
XM_036971823.1 mRNA upstream 15028 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 204740 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 310044 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 351262 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 352950 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 1805677 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 1817248 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2098508 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2311700 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 2311700 5509001 ~ 5525069 (+) True LOC110513117
TU2618062 other upstream 136049 3060442 ~ 3060779 (+) True G2289325
TU2617423 other upstream 815433 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 872646 2321874 ~ 2324182 (+) True G2288669
TU2617169 other upstream 941755 2209448 ~ 2255073 (+) False triqk
TU2619328 other downstream 1251588 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1349603 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1349603 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1349603 4546904 ~ 4548844 (+) True G2290455
TU2619856 other downstream 1817355 5014656 ~ 5018314 (+) True smim12

Expression Profile