RNA id: TU2618190


Basic Information

Item Value
RNA id TU2618190
length 238
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G2289441
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3279821 ~ 3280058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGCAGGGATGCCAACTGAACTGATCTCAAAAGGATGGTtgggttgtggaagataggctcctcccacacccacaGCCCAGGCTCACACCCCCTTCTCGTGGAGACCTTAGCAGCTGTCAGGCCCTCAGGCTCCAAACCCCCTTCTGATGTGGGCCTTAGCAGCTGTCAGGCCATcaggctccacacccccttctcgtgAGGACCTTAGCAGCTGTCAGGCCATcaggctccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618189 lncRNA upstream 654 3278949 ~ 3279167 (+) True G2289440
TU2618184 lncRNA upstream 4637 3274683 ~ 3275184 (+) True G2289436
TU2618181 lncRNA upstream 27616 3251940 ~ 3252205 (+) True G2289433
TU2618179 lncRNA upstream 29884 3244975 ~ 3249937 (+) True G2289431
TU2618133 lncRNA upstream 81834 3197635 ~ 3197987 (+) True G2289392
TU2618192 lncRNA downstream 5703 3285761 ~ 3286199 (+) True G2289443
TU2618194 lncRNA downstream 17177 3297235 ~ 3297451 (+) True G2289445
TU2618206 lncRNA downstream 39422 3319480 ~ 3319695 (+) True G2289454
TU2618207 lncRNA downstream 40613 3320671 ~ 3321247 (+) True G2289455
TU2618209 lncRNA downstream 41426 3321484 ~ 3322831 (+) True G2289456
XM_036971823.1 mRNA upstream 98021 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 287733 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 393037 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 434255 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 435943 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 1722920 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 1734491 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 2015751 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 2228943 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 2228943 5509001 ~ 5525069 (+) True LOC110513117
TU2618062 other upstream 219042 3060442 ~ 3060779 (+) True G2289325
TU2617423 other upstream 898426 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 955639 2321874 ~ 2324182 (+) True G2288669
TU2617169 other upstream 1024748 2209448 ~ 2255073 (+) False triqk
TU2619328 other downstream 1168831 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 1266846 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 1266846 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 1266846 4546904 ~ 4548844 (+) True G2290455
TU2619856 other downstream 1734598 5014656 ~ 5018314 (+) True smim12

Expression Profile