RNA id: TU2619232


Basic Information

Item Value
RNA id TU2619232
length 262
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2290320
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4323024 ~ 4323285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTTCACAGGTCCGTGGAACGCAAGAACGCCGTAGAATAACGGAGAATAATACAGGTTGTCCAAAATCCACCAAAACGATCCCTTTTCAAAAGTTCCCAACCCACAATATATTTGAAATCATCTTGATGATTTGAGAAATGAATGGATAGTGTATTTCCAGTAGCCTAGGCTATTGCAGCCTTCCTAAAGCGGTACAGTATAGTAGgctactgtctctatctctggtctGAACGCCAAGAGTCGGACTGCAGACCTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618715 lncRNA upstream 149327 4172426 ~ 4173697 (+) True G2289880
TU2618713 lncRNA upstream 152827 4169766 ~ 4170197 (+) True G2289878
TU2618710 lncRNA upstream 158556 4163700 ~ 4164468 (+) True G2289875
TU2618699 lncRNA upstream 169855 4152652 ~ 4153169 (+) True G2289864
TU2618694 lncRNA upstream 178192 4144543 ~ 4144832 (+) False G2289862
TU2619316 lncRNA downstream 117091 4440376 ~ 4440643 (+) True G2290383
TU2619323 lncRNA downstream 123235 4446520 ~ 4447093 (+) True G2290390
TU2619330 lncRNA downstream 127636 4450921 ~ 4459166 (+) True G2290397
TU2619338 lncRNA downstream 155679 4478964 ~ 4483848 (+) True G2290405
TU2619346 lncRNA downstream 165083 4488368 ~ 4488576 (+) True G2290413
XM_036971823.1 mRNA upstream 1141224 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1330936 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 1436240 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 1477458 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 1479146 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 679693 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 691264 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 972524 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 1185716 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 1185716 5509001 ~ 5525069 (+) True LOC110513117
TU2618062 other upstream 1262245 3060442 ~ 3060779 (+) True G2289325
TU2617423 other upstream 1941629 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 1998842 2321874 ~ 2324182 (+) True G2288669
TU2617169 other upstream 2067951 2209448 ~ 2255073 (+) False triqk
TU2619328 other downstream 125604 4448889 ~ 4449571 (+) True G2290395
TU2619392 other downstream 223619 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 223619 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 223619 4546904 ~ 4548844 (+) True G2290455
TU2619856 other downstream 691371 5014656 ~ 5018314 (+) True smim12

Expression Profile