RNA id: TU2619330


Basic Information

Item Value
RNA id TU2619330
length 234
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2290397
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4450921 ~ 4459166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgctacattacaacactatggaacacccagtctgttacattacaacactatggaacatccagtctgctacattacaacactatggaacatccagtctgttacattacaacactatggaacacccagtctgctacattacaacactatggaacacccagtctgctacattacaacactatggaacacccagtctgctacattacaacactatggaacacccagtctgctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619323 lncRNA upstream 3828 4446520 ~ 4447093 (+) True G2290390
TU2619316 lncRNA upstream 10278 4440376 ~ 4440643 (+) True G2290383
TU2619232 lncRNA upstream 127636 4323024 ~ 4323285 (+) True G2290320
TU2618715 lncRNA upstream 277224 4172426 ~ 4173697 (+) True G2289880
TU2618713 lncRNA upstream 280724 4169766 ~ 4170197 (+) True G2289878
TU2619338 lncRNA downstream 19798 4478964 ~ 4483848 (+) True G2290405
TU2619346 lncRNA downstream 29202 4488368 ~ 4488576 (+) True G2290413
TU2619348 lncRNA downstream 34043 4493209 ~ 4493417 (+) True G2290415
TU2619357 lncRNA downstream 43509 4502675 ~ 4502996 (+) True G2290423
TU2619359 lncRNA downstream 48362 4507528 ~ 4507867 (+) True G2290425
XM_036971823.1 mRNA upstream 1269121 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1458833 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 1564137 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 1605355 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 1607043 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 543812 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 555383 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 836643 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 1049835 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 1049835 5509001 ~ 5525069 (+) True LOC110513117
TU2619328 other upstream 1350 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1390142 3060442 ~ 3060779 (+) True G2289325
TU2617423 other upstream 2069526 2380447 ~ 2381395 (+) True G2288814
TU2617238 other upstream 2126739 2321874 ~ 2324182 (+) True G2288669
TU2617169 other upstream 2195848 2209448 ~ 2255073 (+) False triqk
TU2619392 other downstream 87738 4546904 ~ 4548603 (+) False G2290455
TU2619393 other downstream 87738 4546904 ~ 4548844 (+) False G2290455
TU2619394 other downstream 87738 4546904 ~ 4548844 (+) True G2290455
TU2619856 other downstream 555490 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 925485 5384651 ~ 5401262 (+) False dlgap3

Expression Profile