RNA id: TU2619607


Basic Information

Item Value
RNA id TU2619607
length 241
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G2290655
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4767839 ~ 4768079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAAAGACATGTTTCTGTCCAGTCAGATTATTATGTATAGACATGTTTCTGTCCAGTCAGATTATTATGTATAAACATGTTTCTGTCCTGTCAGATTATTATGTATAGACATGTTTCTGTCCAGTCAGATTATTATGTATAGACATGTTTCTGTCCAGTCAGATTATTATGTATAAACATGTTTCTGTCCAGTCAGATTATTATGTATAAACATGTTTCTGTCCAGTCAGATTATTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619601 lncRNA upstream 4414 4762782 ~ 4763425 (+) True G2290649
TU2619599 lncRNA upstream 5462 4761876 ~ 4762377 (+) True G2290647
TU2619595 lncRNA upstream 7657 4759870 ~ 4760182 (+) True G2290643
TU2619590 lncRNA upstream 19552 4748002 ~ 4748287 (+) True G2290638
TU2619580 lncRNA upstream 24918 4742637 ~ 4742921 (+) True G2290628
TU2619612 lncRNA downstream 4672 4772751 ~ 4773762 (+) False G2290660
TU2619613 lncRNA downstream 4672 4772751 ~ 4773762 (+) True G2290660
TU2619619 lncRNA downstream 6356 4774435 ~ 4774708 (+) True G2290663
TU2619622 lncRNA downstream 13136 4781215 ~ 4781425 (+) True G2290666
TU2619639 lncRNA downstream 47275 4815354 ~ 4816497 (+) True G2290681
XM_036971823.1 mRNA upstream 1586039 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1775751 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 1881055 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 1922273 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 1923961 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 234899 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 246470 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 527730 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 740922 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 740922 5509001 ~ 5525069 (+) True LOC110513117
TU2619393 other upstream 218995 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 218995 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 219236 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 318268 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1707060 3060442 ~ 3060779 (+) True G2289325
TU2619856 other downstream 246577 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 616572 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 633349 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 648753 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 648753 5416832 ~ 5418238 (+) True G2291194

Expression Profile