RNA id: TU2619619


Basic Information

Item Value
RNA id TU2619619
length 274
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G2290663
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4774435 ~ 4774708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcagagtactggaacgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgcgtgctacagatgggtgttgccatcgtgaccagtgagctgagataaggcggagctttacctagcatggacttgtagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaagtcgcagtggtgggtggtataaggtgctttagtgacaaaacggatggcactgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619612 lncRNA upstream 673 4772751 ~ 4773762 (+) False G2290660
TU2619613 lncRNA upstream 673 4772751 ~ 4773762 (+) True G2290660
TU2619607 lncRNA upstream 6356 4767839 ~ 4768079 (+) True G2290655
TU2619601 lncRNA upstream 11010 4762782 ~ 4763425 (+) True G2290649
TU2619599 lncRNA upstream 12058 4761876 ~ 4762377 (+) True G2290647
TU2619622 lncRNA downstream 6507 4781215 ~ 4781425 (+) True G2290666
TU2619639 lncRNA downstream 40646 4815354 ~ 4816497 (+) True G2290681
TU2619682 lncRNA downstream 54595 4829303 ~ 4829580 (+) True G2290713
TU2619684 lncRNA downstream 54974 4829682 ~ 4829906 (+) True G2290715
TU2619694 lncRNA downstream 62610 4837318 ~ 4837564 (+) True G2290725
XM_036971823.1 mRNA upstream 1592635 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1782347 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 1887651 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 1928869 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 1930557 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 228270 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 239841 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 521101 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 734293 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 734293 5509001 ~ 5525069 (+) True LOC110513117
TU2619393 other upstream 225591 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 225591 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 225832 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 324864 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1713656 3060442 ~ 3060779 (+) True G2289325
TU2619856 other downstream 239948 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 609943 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 626720 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 642124 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 642124 5416832 ~ 5418238 (+) True G2291194

Expression Profile