RNA id: TU2619708


Basic Information

Item Value
RNA id TU2619708
length 204
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2290738
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4851795 ~ 4851998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctaggtgtctggttagactgtaaactctcctgcCAAACACACATTaagtatctccaatccaaaattaaatctagaattggcttcctatttcgctacaaagcctcctttactcatgctgccaaacctactctcgtaaaactgactattctaccgatcctcgactttggcgatgtaatttacaaaatagcctccaacactctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619705 lncRNA upstream 4052 4847394 ~ 4847743 (+) True G2290735
TU2619694 lncRNA upstream 14231 4837318 ~ 4837564 (+) True G2290725
TU2619684 lncRNA upstream 21889 4829682 ~ 4829906 (+) True G2290715
TU2619682 lncRNA upstream 22215 4829303 ~ 4829580 (+) True G2290713
TU2619639 lncRNA upstream 35298 4815354 ~ 4816497 (+) True G2290681
TU2619723 lncRNA downstream 5519 4857517 ~ 4858196 (+) True G2290752
TU2619725 lncRNA downstream 9600 4861598 ~ 4861803 (+) True G2290754
TU2619730 lncRNA downstream 24185 4876183 ~ 4876743 (+) False G2290758
TU2619729 lncRNA downstream 24494 4876492 ~ 4877283 (+) True G2290758
TU2619746 lncRNA downstream 39736 4891734 ~ 4893688 (+) True G2290768
XM_036971823.1 mRNA upstream 1669995 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1859707 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 1965011 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 2006229 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 2007917 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 150980 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 162551 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 443811 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 657003 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 657003 5509001 ~ 5525069 (+) True LOC110513117
TU2619393 other upstream 302951 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 302951 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 303192 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 402224 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1791016 3060442 ~ 3060779 (+) True G2289325
TU2619856 other downstream 162658 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 532653 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 549430 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 564834 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 564834 5416832 ~ 5418238 (+) True G2291194

Expression Profile