RNA id: TU2619794


Basic Information

Item Value
RNA id TU2619794
length 252
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2290811
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 4944574 ~ 4944825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatataaaacagtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatgtttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaattactaatgatgataaatacaatccacctgtgtgtaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619791 lncRNA upstream 3832 4940505 ~ 4940742 (+) True G2290808
TU2619781 lncRNA upstream 13453 4930543 ~ 4931121 (+) True G2290798
TU2619772 lncRNA upstream 21058 4923207 ~ 4923516 (+) True G2290789
TU2619760 lncRNA upstream 29141 4915185 ~ 4915433 (+) True G2290781
TU2619759 lncRNA upstream 40524 4903826 ~ 4904050 (+) True G2290780
TU2619795 lncRNA downstream 829 4945654 ~ 4947399 (+) True G2290812
TU2619805 lncRNA downstream 8173 4952998 ~ 4953201 (+) True G2290821
TU2619815 lncRNA downstream 15570 4960395 ~ 4960643 (+) True G2290831
TU2619822 lncRNA downstream 41892 4986717 ~ 4986968 (+) True G2290838
TU2619832 lncRNA downstream 48673 4993498 ~ 4993813 (+) True G2290848
XM_036971823.1 mRNA upstream 1762774 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 1952486 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2057790 2883928 ~ 2886784 (+) True LOC110487826
XM_021559739.2 mRNA upstream 2099008 2816484 ~ 2845566 (+) True LOC110487823
XM_021559740.2 mRNA upstream 2100696 2816476 ~ 2843878 (+) False LOC110487823
XM_021559746.2 mRNA downstream 58153 5002978 ~ 5011804 (+) True pef1
XM_036971384.1 mRNA downstream 69724 5014549 ~ 5017948 (+) False smim12
XM_036970898.1 mRNA downstream 350984 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 564176 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 564176 5509001 ~ 5525069 (+) True LOC110513117
TU2619393 other upstream 395730 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 395730 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 395971 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 495003 4448889 ~ 4449571 (+) True G2290395
TU2618062 other upstream 1883795 3060442 ~ 3060779 (+) True G2289325
TU2619856 other downstream 69831 5014656 ~ 5018314 (+) True smim12
TU2620245 other downstream 439826 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 456603 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 472007 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 472007 5416832 ~ 5418238 (+) True G2291194

Expression Profile