RNA id: TU2619945


Basic Information

Item Value
RNA id TU2619945
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2290938
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5094972 ~ 5095182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaacctgttatggatgatgcaaattttcgcagctttttgttaaaaatcgcgcaacatttcaaagtcctgctactcatgccaggaatatagtatatgcatatgataagtatgtgtggatagaaaacactctgaagtttctaaaactggttaaatcgggtctgtggctataacagaacgtgtttaggagtaaaaatccctggtaaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619940 lncRNA upstream 9880 5084836 ~ 5085092 (+) True G2290933
TU2619858 lncRNA upstream 81239 5013435 ~ 5013733 (+) True G2290872
TU2619853 lncRNA upstream 82314 5012224 ~ 5012658 (+) True G2290867
TU2619832 lncRNA upstream 101159 4993498 ~ 4993813 (+) True G2290848
TU2619822 lncRNA upstream 108004 4986717 ~ 4986968 (+) True G2290838
TU2619964 lncRNA downstream 14389 5109571 ~ 5109858 (+) True G2290955
TU2619972 lncRNA downstream 18019 5113201 ~ 5374341 (+) False dlgap3
TU2619980 lncRNA downstream 25364 5120546 ~ 5120936 (+) True G2290967
TU2619985 lncRNA downstream 27444 5122626 ~ 5123090 (+) True G2290970
TU2620014 lncRNA downstream 75230 5170412 ~ 5171309 (+) False G2290994
XM_036971384.1 mRNA upstream 77024 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 83168 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 1913172 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2102884 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2208188 2883928 ~ 2886784 (+) True LOC110487826
XM_036970898.1 mRNA downstream 200627 5295809 ~ 5412625 (+) False dlgap3
XM_036971692.1 mRNA downstream 413819 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 413819 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 496930 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 537115 5632297 ~ 5641547 (+) True slc6a18
TU2619856 other upstream 76658 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 546128 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 546128 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 546369 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 645401 4448889 ~ 4449571 (+) True G2290395
TU2620245 other downstream 289469 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 306246 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 321650 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 321650 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 376381 5471563 ~ 5472153 (+) True G2291219

Expression Profile