RNA id: TU2620228


Basic Information

Item Value
RNA id TU2620228
length 207
lncRNA type intronic
GC content 0.55
exon number 1
gene id G2291186
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5380077 ~ 5380283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctttcctccctcccttcccttagttccctctctctctcctaccttcccttggttccctctctctctcctcccttcccttagttccctctctctcctcccttcccttagttccctccatctcctcccttcccttagttccctctctctcctccctcccttcccttagttccctctctctctcctccctcccttcccttatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2619972 lncRNA upstream 5736 5113201 ~ 5374341 (+) False dlgap3
TU2620110 lncRNA upstream 14819 5364114 ~ 5365258 (+) True G2291082
TU2620115 lncRNA upstream 14975 5363320 ~ 5365102 (+) False G2291082
TU2620106 lncRNA upstream 25684 5351310 ~ 5354393 (+) True G2291078
TU2620104 lncRNA upstream 26379 5351310 ~ 5353698 (+) False G2291078
TU2620249 lncRNA downstream 5082 5385365 ~ 5386056 (+) True G2291198
TU2620238 lncRNA downstream 32403 5412686 ~ 5413092 (+) True G2291193
TU2620235 lncRNA downstream 35893 5416176 ~ 5416762 (+) True G2291192
TU2620242 lncRNA downstream 36549 5416832 ~ 5418238 (+) False G2291194
TU2620277 lncRNA downstream 72370 5452653 ~ 5466304 (+) True G2291213
XM_036971384.1 mRNA upstream 362129 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 368273 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2198277 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2387989 2930144 ~ 2992088 (+) True angpt2b
XM_021559742.2 mRNA upstream 2493293 2883928 ~ 2886784 (+) True LOC110487826
XM_036971692.1 mRNA downstream 128718 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 128718 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 211829 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 252014 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 264900 5645183 ~ 5677904 (+) True LOC110489437
TU2619856 other upstream 361763 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 831233 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 831233 4546904 ~ 4548844 (+) True G2290455
TU2619392 other upstream 831474 4546904 ~ 4548603 (+) False G2290455
TU2619328 other upstream 930506 4448889 ~ 4449571 (+) True G2290395
TU2620245 other downstream 4368 5384651 ~ 5401262 (+) False dlgap3
TU2620246 other downstream 21145 5401428 ~ 5407508 (+) True dlgap3
TU2620241 other downstream 36549 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 36549 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 91280 5471563 ~ 5472153 (+) True G2291219

Expression Profile