RNA id: TU2620238


Basic Information

Item Value
RNA id TU2620238
length 407
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2291193
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5412686 ~ 5413092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACGAAGTAGCACTCTTGTTAAGTCACTGGAATGTGTAGACAAACAGCACTTGCCTGTTCACCTAGCGTAGCCTAGCTTGGTTTAGCCTAGCCTCCATCCTCACAGGAAATAAGGGCTTCCCCGGGACAAACCTCAACCACTCCTGTGGGCAAAGAGCGAACGATATCTCAAAATGGATGCTCAGCTCAACATCACACAAGGCTCTAAGGTATTCTCAACATACAACTAGCTACTGTTCAACACCATTTGGCTCGTTGGCTACATCCTCTGTAAAACTATGTTATACACACTCACCCAACCTTCAACTACGGACGGCATTCAACCTACATGCCTCCTACACAAGACCCAGTCTACACTCATTCATCTAAGACTATATTCTCTCTCCCAACTCTTTCCTCTTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2620249 lncRNA upstream 26630 5385365 ~ 5386056 (+) True G2291198
TU2620228 lncRNA upstream 32403 5380077 ~ 5380283 (+) True G2291186
TU2620110 lncRNA upstream 47428 5364114 ~ 5365258 (+) True G2291082
TU2620115 lncRNA upstream 47584 5363320 ~ 5365102 (+) False G2291082
TU2620106 lncRNA upstream 58293 5351310 ~ 5354393 (+) True G2291078
TU2620235 lncRNA downstream 3084 5416176 ~ 5416762 (+) True G2291192
TU2620242 lncRNA downstream 3740 5416832 ~ 5418238 (+) False G2291194
TU2620277 lncRNA downstream 39561 5452653 ~ 5466304 (+) True G2291213
TU2620281 lncRNA downstream 48649 5461741 ~ 5462301 (+) True G2291215
TU2620285 lncRNA downstream 57371 5470463 ~ 5471514 (+) False G2291218
XM_036970898.1 mRNA upstream 61 5295809 ~ 5412625 (+) False dlgap3
XM_036971384.1 mRNA upstream 394738 5014549 ~ 5017948 (+) False smim12
XM_021559746.2 mRNA upstream 400882 5002978 ~ 5011804 (+) True pef1
XM_036971823.1 mRNA upstream 2230886 3160218 ~ 3181800 (+) True LOC118946537
XM_036971624.1 mRNA upstream 2420598 2930144 ~ 2992088 (+) True angpt2b
XM_036971692.1 mRNA downstream 95909 5509001 ~ 5525069 (+) False LOC110513117
XM_036971693.1 mRNA downstream 95909 5509001 ~ 5525069 (+) True LOC110513117
XM_036971451.1 mRNA downstream 179020 5592112 ~ 5615373 (+) True LOC110489357
XM_021562074.2 mRNA downstream 219205 5632297 ~ 5641547 (+) True slc6a18
XM_036971729.1 mRNA downstream 232091 5645183 ~ 5677904 (+) True LOC110489437
TU2620246 other upstream 5178 5401428 ~ 5407508 (+) True dlgap3
TU2620245 other upstream 11424 5384651 ~ 5401262 (+) False dlgap3
TU2619856 other upstream 394372 5014656 ~ 5018314 (+) True smim12
TU2619393 other upstream 863842 4546904 ~ 4548844 (+) False G2290455
TU2619394 other upstream 863842 4546904 ~ 4548844 (+) True G2290455
TU2620241 other downstream 3740 5416832 ~ 5418238 (+) False G2291194
TU2620244 other downstream 3740 5416832 ~ 5418238 (+) True G2291194
TU2620290 other downstream 58471 5471563 ~ 5472153 (+) True G2291219
TU2620425 other downstream 311232 5724324 ~ 5738945 (+) False wipf3
TU2620421 other downstream 311294 5724386 ~ 5738945 (+) False wipf3

Expression Profile